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rtbdn retbindin [ Danio rerio (zebrafish) ]

Gene ID: 553764, updated on 2-Nov-2024

Summary

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Official Symbol
rtbdnprovided by ZNC
Official Full Name
retbindinprovided by ZNC
Primary source
ZFIN:ZDB-GENE-050522-166
See related
Ensembl:ENSDARG00000103413 AllianceGenome:ZFIN:ZDB-GENE-050522-166
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:109949
Summary
Predicted to enable riboflavin binding activity; riboflavin transmembrane transporter activity; and signaling receptor activity. Predicted to be active in external side of plasma membrane. Is expressed in nervous system and optic vesicle. Orthologous to human RTBDN (retbindin). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
all
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Genomic context

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See rtbdn in Genome Data Viewer
Location:
chromosome: 3
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (7608910..7643939)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (7723120..7754212)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 502 Neighboring gene zinc finger protein 431 Neighboring gene JunB proto-oncogene, AP-1 transcription factor subunit b Neighboring gene hook microtubule-tethering protein 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Induced autoimmunity against gonadal proteins affects gonadal development in juvenile zebrafish. Presslauer C, et al. PLoS One, 2014. PMID 25436775, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC109949

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
enables riboflavin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables riboflavin transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables signaling receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
retbindin
Names
riboflavin-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001020730.1 → NP_001018566.2  retbindin precursor

    Status: PROVISIONAL

    Source sequence(s)
    BC095075
    UniProtKB/TrEMBL
    A0A8M1N650, Q504D0
    Related
    ENSDARP00000140201.1, ENSDART00000165551.2
    Conserved Domains (1) summary
    pfam03024
    Location:29 → 200
    Folate_rec; Folate receptor family

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    7608910..7643939
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_009299101.4 → XP_009297376.1  retbindin isoform X1

    UniProtKB/TrEMBL
    A0A0R4IY94, A0A8M3B829, Q504D0
    Conserved Domains (1) summary
    pfam03024
    Location:29 → 200
    Folate_rec; Folate receptor family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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