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ngly1 N-glycanase 1 [ Danio rerio (zebrafish) ]

Gene ID: 553627, updated on 2-Nov-2024

Summary

Official Symbol
ngly1provided by ZNC
Official Full Name
N-glycanase 1provided by ZNC
Primary source
ZFIN:ZDB-GENE-050522-535
See related
Ensembl:ENSDARG00000003205 AllianceGenome:ZFIN:ZDB-GENE-050522-535
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:6895151; zgc:110561
Summary
Predicted to enable peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity. Acts upstream of or within peripheral nervous system neuron axonogenesis; skeletal muscle tissue development; and swimming behavior. Predicted to be located in cytoplasm. Predicted to be active in cytosol and nucleus. Is expressed in brain; caudal fin; peripheral nervous system; and spinal cord. Human ortholog(s) of this gene implicated in congenital disorder of deglycosylation 1. Orthologous to human NGLY1 (N-glycanase 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See ngly1 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 19 NC_007130.7 (20761670..20777190, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 19 NC_007130.6 (21177347..21192867, complement)

Chromosome 19 - NC_007130.7Genomic Context describing neighboring genes Neighboring gene RAB5A, member RAS oncogene family, a Neighboring gene K(lysine) acetyltransferase 2B Neighboring gene nuclear transport factor 2, like Neighboring gene ADNP homeobox 2b

Genomic regions, transcripts, and products

Expression

  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Pathways from PubChem

General gene information

Clone Names

  • MGC110561

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm ISS
Inferred from Sequence or Structural Similarity
more info
 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase
Names
PNGase
peptide:N-glycanase
NP_001018437.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001020601.1NP_001018437.1  peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase

    See identical proteins and their annotated locations for NP_001018437.1

    Status: PROVISIONAL

    Source sequence(s)
    BC095313
    UniProtKB/Swiss-Prot
    Q503I8
    UniProtKB/TrEMBL
    B2GSS9
    Related
    ENSDARP00000008500.5, ENSDART00000019206.6
    Conserved Domains (5) summary
    cd10459
    Location:799
    PUB_PNGase; PNGase/UBA or UBX (PUB) domain of the P97 adaptor protein Peptide:N-glycanase (PNGase)
    COG1305
    Location:278355
    YebA; Transglutaminase-like enzyme, putative cysteine protease [Posttranslational modification, protein turnover, chaperones]
    pfam01841
    Location:262339
    Transglut_core; Transglutaminase-like superfamily
    pfam03835
    Location:323419
    Rad4; Rad4 transglutaminase-like domain
    pfam04721
    Location:442641
    PAW; PNGase C-terminal domain, mannose-binding module PAW

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007130.7 Reference GRCz11 Primary Assembly

    Range
    20761670..20777190 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)