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srrm2 serine/arginine repetitive matrix 2 [ Danio rerio (zebrafish) ]

Gene ID: 553531, updated on 12-Sep-2024

Summary

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Official Symbol
srrm2provided by ZNC
Official Full Name
serine/arginine repetitive matrix 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-050522-399
See related
Ensembl:ENSDARG00000037965 AllianceGenome:ZFIN:ZDB-GENE-050522-399
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:110023
Summary
Orthologous to human SRRM2 (serine/arginine repetitive matrix 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See srrm2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 3 NC_007114.7 (32631336..32650278)
105 previous assembly GRCz10 (GCF_000002035.5) 3 NC_007114.6 (32499622..32518564)

Chromosome 3 - NC_007114.7Genomic Context describing neighboring genes Neighboring gene unc-119 lipid binding chaperone c Neighboring gene matrix metallopeptidase 25a Neighboring gene THO complex 6 Neighboring gene si:dkey-16l2.16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. A novel protein domain in an ancestral splicing factor drove the evolution of neural microexons. Torres-Méndez A, et al. Nat Ecol Evol, 2019 Apr. PMID 30833759
  2. A network of epigenetic regulators guides developmental haematopoiesis in vivo. Huang HT, et al. Nat Cell Biol, 2013 Dec. PMID 24240475, Free PMC Article
  3. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
  4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC110023

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
serine/arginine repetitive matrix protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001030075.2 → NP_001025246.2  serine/arginine repetitive matrix protein 2

    Status: VALIDATED

    Source sequence(s)
    BX571714, CU459155
    UniProtKB/TrEMBL
    A0A8M1N752, F1QLP6, F1QUP6
    Related
    ENSDARP00000110322.3, ENSDART00000129339.4
    Conserved Domains (1) summary
    pfam08312
    Location:61 → 103
    cwf21; cwf21 domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007114.7 Reference GRCz11 Primary Assembly

    Range
    32631336..32650278
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021470715.2 → XP_021326390.1  serine/arginine repetitive matrix protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8M9PZ27
    Conserved Domains (4) summary
    pfam08312
    Location:61 → 103
    cwf21; cwf21 domain
    cl25887
    Location:482 → 584
    RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
    cl28033
    Location:743 → 917
    Herpes_ICP4_C; Herpesvirus ICP4-like protein C-terminal region
    cl28310
    Location:288 → 515
    Rho; Transcription termination factor Rho [Transcription]

Reference GRCz11 ALT_DRER_TU_1

Genomic

  1. NW_018394535.1 Reference GRCz11 ALT_DRER_TU_1

    Range
    118898..137860
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCz11 ALT_DRER_TU_2

Genomic

  1. NW_018395227.1 Reference GRCz11 ALT_DRER_TU_2

    Range
    380..12204
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

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