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b4galnt3b beta-1,4-N-acetyl-galactosaminyl transferase 3b [ Danio rerio (zebrafish) ]

Gene ID: 553524, updated on 27-Mar-2024

Summary

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Official Symbol
b4galnt3bprovided by ZNC
Official Full Name
beta-1,4-N-acetyl-galactosaminyl transferase 3bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-8615
See related
Ensembl:ENSDARG00000058939 AllianceGenome:ZFIN:ZDB-GENE-030131-8615
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
fa92a05; wu:fa92a05; si:ch1073-380l12.1
Summary
Predicted to enable acetylgalactosaminyltransferase activity. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Orthologous to human B4GALNT3 (beta-1,4-N-acetyl-galactosaminyltransferase 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See b4galnt3b in Genome Data Viewer
Location:
chromosome: 18
Exon count:
20
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 18 NC_007129.7 (6558359..6617540)
105 previous assembly GRCz10 (GCF_000002035.5) 18 NC_007129.6 (6417988..6477175)

Chromosome 18 - NC_007129.7Genomic Context describing neighboring genes Neighboring gene DEAD/H (Asp-Glu-Ala-Asp/His) box helicase 11 Neighboring gene FKBP prolyl isomerase 4 Neighboring gene troponin I, skeletal, slow c Neighboring gene C2 calcium dependent domain containing 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables acetylgalactosaminyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase 2; beta-1,4-N-acetylgalactosaminyltransferase 3
Names
beta 1,4-N-acetylgalactosaminyltransferase-transferase-III
XP_001342883.4
XP_021323415.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007129.7 Reference GRCz11 Primary Assembly

    Range
    6558359..6617540
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001342847.8 → XP_001342883.4  beta-1,4-N-acetylgalactosaminyltransferase 3 isoform X1

    UniProtKB/TrEMBL
    A0A8M1PSP9, F1QYH1
    Related
    ENSDARP00000102026.3, ENSDART00000110892.5
    Conserved Domains (2) summary
    cl08459
    Location:117 → 239
    PA14; PA14 domain
    cl11394
    Location:840 → 1118
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_021467740.1 → XP_021323415.1  beta-1,4-N-acetylgalactosaminyltransferase 3 isoform X2

    UniProtKB/TrEMBL
    A0A8M9PQL5
    Related
    ENSDARP00000133891.1, ENSDART00000169401.2
    Conserved Domains (2) summary
    cl08459
    Location:117 → 239
    PA14; PA14 domain
    cl11394
    Location:838 → 1117
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version

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