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hdhd3 haloacid dehalogenase-like hydrolase domain containing 3 [ Danio rerio (zebrafish) ]

Gene ID: 553464, updated on 12-Sep-2024

Summary

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Official Symbol
hdhd3provided by ZNC
Official Full Name
haloacid dehalogenase-like hydrolase domain containing 3provided by ZNC
Primary source
ZFIN:ZDB-GENE-040724-118
See related
Ensembl:ENSDARG00000053934 AllianceGenome:ZFIN:ZDB-GENE-040724-118
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:136363; zgc:158529; si:ch211-10e8.6
Summary
Predicted to enable hydrolase activity. Orthologous to human HDHD3 (haloacid dehalogenase like hydrolase domain containing 3). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
human mouse all
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Genomic context

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See hdhd3 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (41018565..41021438, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (41021029..41023902, complement)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 2 member 11a Neighboring gene transforming growth factor, alpha Neighboring gene TruB pseudouridine (psi) synthase family member 2 Neighboring gene ectonucleoside triphosphate diphosphohydrolase 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC136363, MGC158529

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
haloacid dehalogenase-like hydrolase domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001045267.2 → NP_001038732.2  haloacid dehalogenase-like hydrolase domain-containing protein 3

    See identical proteins and their annotated locations for NP_001038732.2

    Status: VALIDATED

    Source sequence(s)
    AL732598, BC095713, EH544338
    UniProtKB/Swiss-Prot
    Q1JQ17, Q502F9, Q7T012
    Related
    ENSDARP00000094552.3, ENSDART00000103776.4
    Conserved Domains (2) summary
    TIGR02252
    Location:6 → 208
    DREG-2; REG-2-like, HAD superfamily (subfamily IA) hydrolase
    cl21460
    Location:147 → 233
    HAD_like; Haloacid Dehalogenase-like Hydrolases

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    41018565..41021438 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7T012.1 GenPept UniProtKB/Swiss-Prot:Q7T012

Gene LinkOut

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