dnajc1 DnaJ (Hsp40) homolog, subfamily C, member 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: dnajc1provided by ZNC
Official Full Name: DnaJ (Hsp40) homolog, subfamily C, member 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-061103-529
See related: Ensembl:ENSDARG00000001940 AllianceGenome:ZFIN:ZDB-GENE-061103-529
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: dnajc1l; zgc:152779
Summary: Predicted to be located in membrane. Predicted to be active in endomembrane system. Is expressed in telencephalon. Orthologous to human DNAJC1 (DnaJ heat shock protein family (Hsp40) member C1). [provided by Alliance of Genome Resources, Oct 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 2

Exon count:: 12

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	2	NC_007113.7 (21175072..21182561)
105	previous assembly	GRCz10 (GCF_000002035.5)	2	NC_007113.6 (21517010..21524499)

Chromosome 2 - NC_007113.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
is_active_in endomembrane system	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: dnaJ homolog subfamily C member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001077535.1 → NP_001071003.1 dnaJ homolog subfamily C member 1 precursor

See identical proteins and their annotated locations for NP_001071003.1

Status: PROVISIONAL

Source sequence(s)

BC125818

UniProtKB/TrEMBL

A0JMB9

Related

ENSDARP00000073973.4, ENSDART00000079518.5

Conserved Domains (2) summary

cd00167
Location:469 → 514

SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

pfam00226
Location:42 → 103

DnaJ; DnaJ domain