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LOC553296 sarcoplasmic reticulum histidine-rich calcium-binding protein [ Danio rerio (zebrafish) ]

Gene ID: 553296, updated on 12-Sep-2024

Summary

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Gene symbol
LOC553296
Gene description
sarcoplasmic reticulum histidine-rich calcium-binding protein
See related
Ensembl:ENSDARG00000045947
Gene type
protein coding
RefSeq status
MODEL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
hrc
Orthologs
all
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Genomic context

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See LOC553296 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (4377298..4388709, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (4340640..4352046, complement)

Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene si:ch211-173d10.4 Neighboring gene carbonic anhydrase XV c Neighboring gene transient receptor potential melastatin 4b3 Neighboring gene transient receptor potential cation channel, subfamily M, member 4b, tandem duplicate 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Molecular and functional analyses of aspolin, a fish-specific protein extremely rich in aspartic acid. Kinoshita S, et al. Mar Biotechnol (NY), 2011 Jun. PMID 20878432
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
sarcoplasmic reticulum histidine-rich calcium-binding protein
Names
histidine rich calcium binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007123.7 Reference GRCz11 Primary Assembly

    Range
    4377298..4388709 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002663895.7 → XP_002663941.1  sarcoplasmic reticulum histidine-rich calcium-binding protein isoform X2

    UniProtKB/TrEMBL
    A0A8M1RKJ5, R4GEJ6
    Related
    ENSDARP00000126909.1, ENSDART00000152168.2

  2. XM_021480210.2 → XP_021335885.1  sarcoplasmic reticulum histidine-rich calcium-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A8M9QMQ8
Nucleotide Protein Strain
Heading Accession and Version

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