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mrpl34 mitochondrial ribosomal protein L34 [ Danio rerio (zebrafish) ]

Gene ID: 552972, updated on 2-Nov-2024

Summary

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Official Symbol
mrpl34provided by ZNC
Official Full Name
mitochondrial ribosomal protein L34provided by ZNC
Primary source
ZFIN:ZDB-GENE-070912-582
See related
Ensembl:ENSDARG00000092954 AllianceGenome:ZFIN:ZDB-GENE-070912-582
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
im:6901724; si:dkey-77a20.7
Summary
Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL34 (mitochondrial ribosomal protein L34). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See mrpl34 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (24317465..24320183)
105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (24661814..24664532)

Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene fat storage inducing transmembrane protein 1, like Neighboring gene tRNA selenocysteine 1 associated protein 1b Neighboring gene anoctamin 8a Neighboring gene Pim proto-oncogene, serine/threonine kinase, related 68

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of mitochondrial large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
large ribosomal subunit protein bL34m

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199680.2 → NP_001186609.1  large ribosomal subunit protein bL34m isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    EH548046, EH550822, EH569164
    UniProtKB/TrEMBL
    A0A8M1NWF3, E9QEZ5
    Related
    ENSDARP00000121717.1, ENSDART00000139339.2
    Conserved Domains (1) summary
    pfam00468
    Location:79 → 120
    Ribosomal_L34; Ribosomal protein L34

  2. NM_001302507.1 → NP_001289436.1  large ribosomal subunit protein bL34m isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 5' coding region, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    EH440364, EH550822, EH569164
    UniProtKB/TrEMBL
    A0A8M1P1L9, E9QF21
    Related
    ENSDARP00000114531.1, ENSDART00000136284.2
    Conserved Domains (1) summary
    pfam00468
    Location:78 → 119
    Ribosomal_L34; Ribosomal protein L34

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007113.7 Reference GRCz11 Primary Assembly

    Range
    24317465..24320183
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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