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PPP2R5E protein phosphatase 2 regulatory subunit B'epsilon [ Homo sapiens (human) ]

Gene ID: 5529, updated on 3-Nov-2024

Summary

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Official Symbol
PPP2R5Eprovided by HGNC
Official Full Name
protein phosphatase 2 regulatory subunit B'epsilonprovided by HGNC
Primary source
HGNC:HGNC:9313
See related
Ensembl:ENSG00000154001 MIM:601647; AllianceGenome:HGNC:9313
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
B56E; B56epsilon
Summary
The protein encoded by this gene belongs to the phosphatase 2A regulatory subunit B family. Protein phosphatase 2A is one of the four major Ser/Thr phosphatases, and it is implicated in the negative control of cell growth and division. It consists of a common heteromeric core enzyme, which is composed of a catalytic subunit and a constant regulatory subunit, that associates with a variety of regulatory subunits. The B regulatory subunit might modulate substrate selectivity and catalytic activity. This gene encodes an epsilon isoform of the regulatory subunit B56 subfamily. Multiple transcript variants encoding several different isoforms have been found for this gene. [provided by RefSeq, Aug 2013]
Expression
Ubiquitous expression in thyroid (RPKM 11.5), colon (RPKM 9.9) and 25 other tissues See more
Orthologs
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Genomic context

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See PPP2R5E in Genome Data Viewer
Location:
14q23.2
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 14 NC_000014.9 (63371364..63543377, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 14 NC_060938.1 (57578735..57750775, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (63838082..64010095, complement)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene ras homolog family member J Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:63764973-63765474 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:63765475-63765974 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:63799179-63799678 Neighboring gene glycoprotein hormone subunit beta 5 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_34994 Neighboring gene Sharpr-MPRA regulatory region 14795 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8504 Neighboring gene U6 spliceosomal RNA Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8505 Neighboring gene uncharacterized LOC124900352 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:63950021-63950522 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr14:63950523-63951022 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8506 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8507 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8508 Neighboring gene loricrin-like Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5827 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5828 Neighboring gene H3K27ac hESC enhancer GRCh37_chr14:64010147-64011138 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 8510 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr14:64030470-64031292 Neighboring gene ribosomal protein L31 pseudogene 5 Neighboring gene glycine C-acetyltransferase pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Deregulation of the miR-19b/PPP2R5E Signaling Axis Shows High Functional Impact in Colorectal Cancer Cells. Santos A, et al. Int J Mol Sci, 2023 Apr 24. PMID 37175484, Free PMC Article
  2. Downregulation of PPP2R5E is a common event in acute myeloid leukemia that affects the oncogenic potential of leukemic cells. Cristóbal I, et al. Haematologica, 2013 Sep. PMID 23812941, Free PMC Article
  3. From promiscuity to precision: protein phosphatases get a makeover. Virshup DM, et al. Mol Cell, 2009 Mar 13. PMID 19285938
  4. Protein phosphatase 2A regulatory subunits and cancer. Eichhorn PJ, et al. Biochim Biophys Acta, 2009 Jan. PMID 18588945
  5. Downregulation of PPP2R5E expression by miR-23a suppresses apoptosis to facilitate the growth of gastric cancer cells. Liu X, et al. FEBS Lett, 2014 Aug 25. PMID 24997345

See all (98) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Deregulation of the miR-19b/PPP2R5E Signaling Axis Shows High Functional Impact in Colorectal Cancer Cells.
    Title: Deregulation of the miR-19b/PPP2R5E Signaling Axis Shows High Functional Impact in Colorectal Cancer Cells.
  2. Functional and Structural Insights into a Vif/PPP2R5 Complex Elucidated Using Patient HIV-1 Isolates and Computational Modeling.
    Title: Functional and Structural Insights into a Vif/PPP2R5 Complex Elucidated Using Patient HIV-1 Isolates and Computational Modeling.
  3. EFNA5, BAHD1 and PPP2R5E were particularly good candidates for novel disease loci
    Title: Mapping of breakpoints in balanced chromosomal translocations by shallow whole-genome sequencing points to EFNA5, BAHD1 and PPP2R5E as novel candidates for genes causing human Mendelian disorders.
  4. results suggest that the PPP2R5E phosphatase may contribute to microtubule organization by stabilizing MTCL1.
    Title: A regulatory subunit of protein phosphatase 2A, PPP2R5E, regulates the abundance of microtubule crosslinking factor 1.
  5. PP2A holoenzyme containing B56 is responsible for the dephosphorylation of gamma-H2AX and regulation of DNA repair of double strand breaks induced by camptothecin.
    Title: PP2A-B56ϵ complex is involved in dephosphorylation of γ-H2AX in the repair process of CPT-induced DNA double-strand breaks.
  6. KIF4A and PP2A-B56G and -B56E create a spatially restricted negative feedback loop counteracting Aurora B in anaphase.
    Title: KIF4A and PP2A-B56 form a spatially restricted feedback loop opposing Aurora B at the anaphase central spindle.
  7. the significance of miR-23a and PPP2R5E in the proliferation and apoptosis of gastric cancer cells
    Title: Downregulation of PPP2R5E expression by miR-23a suppresses apoptosis to facilitate the growth of gastric cancer cells.
  8. The two functional variants in PPP2R1A and PPP2R5E and their combinations are associated with lung cancer risk in the Chinese.
    Title: Functional genetic polymorphisms in PP2A subunit genes confer increased risks of lung cancer in southern and eastern Chinese.
  9. Downregulation of PPP2R5E affects the oncogenic potential of leukemic cells.
    Title: Downregulation of PPP2R5E is a common event in acute myeloid leukemia that affects the oncogenic potential of leukemic cells.
  10. identified the phosphorylation of hSgo2 by Aurora B at the N-terminal coiled-coil region and the middle region, and showed that these phosphorylations separately promote binding of hSgo2 to PP2A and MCAK
    Title: Phosphorylation of mammalian Sgo2 by Aurora B recruits PP2A and MCAK to centromeres.
Submit: New GeneRIF Correction See all GeneRIFs (12)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Association between single nucleotide polymorphism-genotype and outcome of patients with chronic lymphocytic leukemia in a randomized chemotherapy trial.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

HIV-1 interactions

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Replication interactions

Interaction Pubs
Knockdown of protein phosphatase 2, regulatory subunit B', epsilon isoform (PPP2R5E) by siRNA inhibits the early stages of HIV-1 replication in 293T cells infected with VSV-G pseudotyped HIV-1 PubMed

Protein interactions

Protein Gene Interaction Pubs
Tat tat HIV-1 Tat upregulates the total levels of PP2A protein and downregulates the inactive form of phosphorylated PP2A, which leads to inhibit hTERT activity directly or indirectly in CD4+ T cells PubMed
tat Protein phosphatase-2A (PP2A) and protein phosphatase-1 (PP1) regulate HIV-1 Tat-activated transcription through dephosphorylation of CDK9 PubMed
tat HIV-1 Tat associates with the promoters of both PPP2R1B and PPP2R5E to increase PPP2R1B and PPP2R5E RNA and protein levels as well as PP2A activity in Jurkat T cells PubMed
tat An increase in the amount of PP2A core enzyme with a concomitant decrease in the amount of PP2A holoenzyme inhibits HIV-1 Tat-stimulated transcription from the HIV-1 LTR promoter, indicating a role for PP2A in the modulation of HIV-1 gene expression PubMed
Vpr vpr Amino-acid peptide sequence (residues 77-92) of HIV-1 Vpr binds to PP2A1. The sequence from HIV-1 89.6 strain is a cell penetrating and death domain PubMed
vpr HIV-1 Vpr was found to upregulate PP2A in fission yeast PubMed
vpr HIV-1 Vpr forms a complex with HIV-1 nucleocapsid that directly activates PP2A PubMed
Vpu vpu HIV-1 Vpu is identified to have a physical interaction with protein phosphatase 2, regulatory subunit B', epsilon isoform (PPP2R5E) in human HEK293 and/or Jurkat cell lines by using affinity tagging and purification mass spectrometry analyses PubMed
nucleocapsid gag HIV-1 Vpr forms a complex with HIV-1 nucleocapsid that directly activates PP2A PubMed

Go to the HIV-1, Human Interaction Database

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein phosphatase activator activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein phosphatase regulator activity TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in signal transduction IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm TAS
Traceable Author Statement
more info
 PubMed 
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytosol IDA
Inferred from Direct Assay
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of protein phosphatase type 2A complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform
Names
PP2A, B subunit, B' epsilon
PP2A, B subunit, B56 epsilon
PP2A, B subunit, PR61 epsilon
PP2A, B subunit, R5 epsilon
protein phosphatase 2 regulatory subunit B', epsilon
serine/threonine protein phosphatase 2A, 56 kDa regulatory subunit, epsilon

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001282179.3 → NP_001269108.1  serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform a

    See identical proteins and their annotated locations for NP_001269108.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) uses an alternate splice junction in the 5' UTR compared to variant 1. Variants 1 and 2 both encode the same isoform (a).
    Source sequence(s)
    AA782601, AB209811, AL118555, AL136038, AW134792, CB989123, CK820060, L76703
    Consensus CDS
    CCDS9758.1
    UniProtKB/Swiss-Prot
    A4FU37, B7ZAW5, B7ZKK8, B7ZKK9, J3KQN6, Q16537, Q52LW4
    UniProtKB/TrEMBL
    B5BTZ7, Q562F2
    Conserved Domains (2) summary
    pfam01603
    Location:55 → 435
    B56; Protein phosphatase 2A regulatory B subunit (B56 family)
    cl27532
    Location:2 → 67
    B56; Protein phosphatase 2A regulatory B subunit (B56 family)

  2. NM_001282180.3 → NP_001269109.1  serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform b

    See identical proteins and their annotated locations for NP_001269109.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) uses an alternate in-frame splice junction at an end of a 3' exon compared to variant 1. The resulting isoform (b) has the same N- and C-termini but is shorter compared to isoform a.
    Source sequence(s)
    AA782601, AK299520, AL118555, AL132992, AL136038, AW134792, CB989123, CK820060, L76703
    Consensus CDS
    CCDS61468.1
    UniProtKB/TrEMBL
    B7Z5X1
    Related
    ENSP00000452396.1, ENST00000555899.1
    Conserved Domains (2) summary
    pfam01603
    Location:55 → 430
    B56; Protein phosphatase 2A regulatory B subunit (B56 family)
    cl27532
    Location:2 → 67
    B56; Protein phosphatase 2A regulatory B subunit (B56 family)

  3. NM_001282181.3 → NP_001269110.1  serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform c

    See identical proteins and their annotated locations for NP_001269110.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (4) contains a distinct 5' UTR and lacks an in-frame portion of the 5' coding region, compared to variant 1. The resulting isoform (c) has a shorter N-terminus compared to isoform a. Variants 4 and 5 both encode the same isoform (c).
    Source sequence(s)
    AA782601, AK301796, AL118555, AW134792, BC093766, CK820060, L76703
    Consensus CDS
    CCDS61467.1
    UniProtKB/TrEMBL
    B7Z7C0
    Related
    ENSP00000404632.2, ENST00000422769.6
    Conserved Domains (1) summary
    pfam01603
    Location:2 → 359
    B56; Protein phosphatase 2A regulatory B subunit (B56 family)

  4. NM_001282182.3 → NP_001269111.1  serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform c

    See identical proteins and their annotated locations for NP_001269111.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) contains a distinct 5' UTR and lacks an in-frame portion of the 5' coding region, compared to variant 1. The resulting isoform (c) has a shorter N-terminus compared to isoform a. Variants 4 and 5 both encode the same isoform (c).
    Source sequence(s)
    AA782601, AK301796, AK316430, AL118555, AW134792, BC093766, CK820060, L76703
    Consensus CDS
    CCDS61467.1
    UniProtKB/TrEMBL
    B7Z7C0
    Conserved Domains (1) summary
    pfam01603
    Location:2 → 359
    B56; Protein phosphatase 2A regulatory B subunit (B56 family)

  5. NM_001354926.2 → NP_001341855.1  serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform d

    Status: REVIEWED

    Source sequence(s)
    AL132992, AL136038, BC056156
    Related
    ENST00000556878.1
    Conserved Domains (1) summary
    cl27532
    Location:55 → 120
    B56; Protein phosphatase 2A regulatory B subunit (B56 family)

  6. NM_006246.5 → NP_006237.1  serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform a

    See identical proteins and their annotated locations for NP_006237.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a). Variants 1 and 2 both encode the same isoform (a).
    Source sequence(s)
    AA782601, AL118555, AL136038, AW134792, BC093766, CB989123, CK820060, L76703
    Consensus CDS
    CCDS9758.1
    UniProtKB/Swiss-Prot
    A4FU37, B7ZAW5, B7ZKK8, B7ZKK9, J3KQN6, Q16537, Q52LW4
    UniProtKB/TrEMBL
    B5BTZ7, Q562F2
    Related
    ENSP00000337641.3, ENST00000337537.8
    Conserved Domains (2) summary
    pfam01603
    Location:55 → 435
    B56; Protein phosphatase 2A regulatory B subunit (B56 family)
    cl27532
    Location:2 → 67
    B56; Protein phosphatase 2A regulatory B subunit (B56 family)

RNA

  1. NR_104104.3 RNA Sequence

    Status: REVIEWED

    Description
    Transcript Variant: This variant (6) lacks an alternate internal exon compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AA782601, AL118555, AL136038, AW134792, BC013154, CB989123, CK820060, L76703

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p14 Primary Assembly

    Range
    63371364..63543377 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047431543.1 → XP_047287499.1  serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X2

  2. XM_024449647.2 → XP_024305415.1  serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X1

    UniProtKB/Swiss-Prot
    A4FU37, B7ZAW5, B7ZKK8, B7ZKK9, J3KQN6, Q16537, Q52LW4
    UniProtKB/TrEMBL
    B5BTZ7, Q562F2
    Conserved Domains (2) summary
    pfam01603
    Location:55 → 435
    B56; Protein phosphatase 2A regulatory B subunit (B56 family)
    cl27532
    Location:2 → 67
    B56; Protein phosphatase 2A regulatory B subunit (B56 family)

  3. XM_047431544.1 → XP_047287500.1  serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X3

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060938.1 Alternate T2T-CHM13v2.0

    Range
    57578735..57750775 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054376319.1 → XP_054232294.1  serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X2

  2. XM_054376318.1 → XP_054232293.1  serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform isoform X1

    UniProtKB/Swiss-Prot
    A4FU37, B7ZAW5, B7ZKK8, B7ZKK9, J3KQN6, Q16537, Q52LW4
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q16537.1 GenPept UniProtKB/Swiss-Prot:Q16537

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