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LOC552398 beta-1,3-galactosyltransferase 1-like [ Apis mellifera (honey bee) ]

Gene ID: 552398, updated on 1-Oct-2024

Summary

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Gene symbol
LOC552398
Gene description
beta-1,3-galactosyltransferase 1-like
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Also known as
B3GalT2; GB20138; GB48222
Orthologs
all
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Genomic context

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See LOC552398 in Genome Data Viewer
Location:
chromosome: LG13
Exon count:
5
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG13 NC_037650.1 (3472059..3474855)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG13 NC_007082.3 (1823649..1826459, complement)

Linkage Group LG13 - NC_037650.1Genomic Context describing neighboring genes Neighboring gene GATA zinc finger domain-containing protein 1 Neighboring gene AP-3 complex subunit sigma-2 or Neighboring gene G patch domain-containing protein 4 Neighboring gene peroxisomal targeting signal 1 receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
  2. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
  3. Finding the missing honey bee genes: lessons learned from a genome upgrade. Elsik CG, et al. BMC Genomics, 2014 Jan 30. PMID 24479613, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 1-like
Names
beta-1,3-galactosyltransferase 2 major
beta-1,3-galactosyltransferase 2 minor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001327959.1 → NP_001314888.1  beta-1,3-galactosyltransferase 1-like

    Status: PROVISIONAL

    Source sequence(s)
    LC017707
    UniProtKB/TrEMBL
    A0A0H5AV98, A0A8B6X0G3, A0A8B7KPR5, A0A8U0WUB9
    Conserved Domains (1) summary
    cl21608
    Location:111 → 305
    Galactosyl_T; Galactosyltransferase

RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037650.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    3472059..3474855
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016915946.2 → XP_016771435.1  beta-1,3-galactosyltransferase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A0H5AV98, A0A8B6X0G3, A0A8B7KPR5, A0A8U0WUB9
    Conserved Domains (1) summary
    cl21608
    Location:111 → 305
    Galactosyl_T; Galactosyltransferase

  2. XM_006558523.3 → XP_006558586.2  beta-1,3-galactosyltransferase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A088AA06, A0A8B6YV88
    Conserved Domains (1) summary
    cl21608
    Location:130 → 324
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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