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LOC5521916 tetratricopeptide repeat protein 38 [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5521916, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5521916
Gene description
tetratricopeptide repeat protein 38
Locus tag
NEMVEDRAFT_v1g157950
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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See LOC5521916 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
15
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 10 NC_064043.1 (7354116..7360074, complement)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834412.1 (746290..756798)

Chromosome 10 - NC_064043.1Genomic Context describing neighboring genes Neighboring gene trace amine-associated receptor 1 Neighboring gene papilin Neighboring gene axoneme-associated protein mst101(2) Neighboring gene nudix hydrolase 20, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetratricopeptide repeat protein 38
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064043.1 Reference jaNemVect1.1

    Range
    7354116..7360074 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032367185.2 → XP_032223076.2  tetratricopeptide repeat protein 38 isoform X2

  2. XM_001641630.3 → XP_001641680.2  tetratricopeptide repeat protein 38 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials