U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC5520357 galactose-3-O-sulfotransferase 2 [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5520357, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC5520357
Gene description
galactose-3-O-sulfotransferase 2
Locus tag
NEMVEDRAFT_v1g159710
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC5520357 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 1 NC_064034.1 (9239624..9243428)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834405.1 (1060128..1063006, complement)

Chromosome 1 - NC_064034.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116603703 Neighboring gene uncharacterized LOC116603705 Neighboring gene galactosylceramide sulfotransferase Neighboring gene galactose-3-O-sulfotransferase 2 Neighboring gene uncharacterized LOC5520430

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylceramide sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
galactose-3-O-sulfotransferase 2
Names
predicted protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064034.1 Reference jaNemVect1.1

    Range
    9239624..9243428
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001640216.3 → XP_001640266.3  galactose-3-O-sulfotransferase 2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials