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LOC551822 ATP-dependent RNA helicase DDX42 [ Apis mellifera (honey bee) ]

Gene ID: 551822, updated on 10-May-2024

Summary

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Gene symbol
LOC551822
Gene description
ATP-dependent RNA helicase DDX42
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Also known as
GB54784
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: LG13
Exon count:
10
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG13 NC_037650.1 (2895078..2898934)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG13 NC_007082.3 (1120410..1124255)

Linkage Group LG13 - NC_037650.1Genomic Context describing neighboring genes Neighboring gene acetyl-coenzyme A transporter 1 Neighboring gene cationic amino acid transporter 4 Neighboring gene uncharacterized LOC726790 Neighboring gene serine/threonine-protein kinase 17A Neighboring gene uncharacterized LOC107965402

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut. Shelomi M, et al. BMC Genomics, 2014 Oct 21. PMID 25331961, Free PMC Article
  2. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
  3. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
  4. Finding the missing honey bee genes: lessons learned from a genome upgrade. Elsik CG, et al. BMC Genomics, 2014 Jan 30. PMID 24479613, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent RNA helicase DDX42

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037650.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    2895078..2898934
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006557846.3 → XP_006557909.1  ATP-dependent RNA helicase DDX42

    See identical proteins and their annotated locations for XP_006557909.1

    UniProtKB/TrEMBL
    A0A7M7GJC3, A0A7M7R9S0, A0A8B6YR54, A0A8B9B1Y6
    Conserved Domains (3) summary
    COG0513
    Location:229 → 712
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd00079
    Location:472 → 604
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:257 → 461
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...

  2. XM_624207.6 → XP_624210.1  ATP-dependent RNA helicase DDX42

    See identical proteins and their annotated locations for XP_624210.1

    UniProtKB/TrEMBL
    A0A7M7GJC3, A0A7M7R9S0, A0A8B6YR54, A0A8B9B1Y6
    Conserved Domains (3) summary
    COG0513
    Location:229 → 712
    SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
    cd00079
    Location:472 → 604
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:257 → 461
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
Nucleotide Protein Strain
Heading Accession and Version

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