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LOC5517888 protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5517888, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5517888
Gene description
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Locus tag
NEMVEDRAFT_v1g181253
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC5517888 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 2 NC_064035.1 (6406842..6413385, complement)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834388.1 (775865..785095, complement)

Chromosome 2 - NC_064035.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein 2 Neighboring gene meprin A subunit beta Neighboring gene uncharacterized LOC125561081 Neighboring gene uncharacterized LOC116601563 Neighboring gene cell surface glycoprotein 1-like Neighboring gene outer dynein arm-docking complex subunit 2 Neighboring gene uncharacterized LOC116606615 Neighboring gene uncharacterized LOC125561079

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064035.1 Reference jaNemVect1.1

    Range
    6406842..6413385 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048724273.1 → XP_048580230.1  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

Nucleotide Protein
Heading Accession and Version

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