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LOC5517863 protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5517863, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5517863
Gene description
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Locus tag
NEMVEDRAFT_v1g161947
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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See LOC5517863 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 2 NC_064035.1 (5814379..5823343)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834388.1 (155966..165127)

Chromosome 2 - NC_064035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116601532 Neighboring gene uncharacterized LOC5517859 Neighboring gene polyadenylate-binding protein 7 Neighboring gene follistatin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064035.1 Reference jaNemVect1.1

    Range
    5814379..5823343
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001637798.3 → XP_001637848.2  protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

    Conserved Domains (2) summary
    cd02514
    Location:306 → 632
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
    cl19122
    Location:102 → 250
    PANDER_like; Domains similar to the Pancreatic-derived factor
Nucleotide Protein
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