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LOC5517048 prolyl 3-hydroxylase 2 [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5517048, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5517048
Gene description
prolyl 3-hydroxylase 2
Locus tag
NEMVEDRAFT_v1g182009
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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See LOC5517048 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 3 NC_064036.1 (1534682..1543588)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834381.1 (464896..473734, complement)

Chromosome 3 - NC_064036.1Genomic Context describing neighboring genes Neighboring gene pyroglutamylated RF-amide peptide receptor Neighboring gene NAD kinase Neighboring gene ephrin-B2 Neighboring gene uncharacterized LOC116605428

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl 3-hydroxylase 2
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064036.1 Reference jaNemVect1.1

    Range
    1534682..1543588
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032386928.2 → XP_032242819.2  prolyl 3-hydroxylase 2 isoform X2

  2. XM_032386927.2 → XP_032242818.2  prolyl 3-hydroxylase 2 isoform X1

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials