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sxc O-linked N-acetylglucosamine (GlcNAc) transferase sxc [ Apis mellifera (honey bee) ]

Gene ID: 551425, updated on 2-Oct-2024

Summary

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Gene symbol
sxc
Gene description
O-linked N-acetylglucosamine (GlcNAc) transferase sxc
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Also known as
GB55247
Orthologs
fruit fly all
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Genomic context

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See sxc in Genome Data Viewer
Location:
chromosome: LG11
Exon count:
13
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG11 NC_037648.1 (2835802..2850299)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG11 NC_007080.3 (3138033..3152625)

Linkage Group LG11 - NC_037648.1Genomic Context describing neighboring genes Neighboring gene lipopolysaccharide-induced tumor necrosis factor-alpha factor homolog Neighboring gene nucleoside diphosphate kinase Neighboring gene uncharacterized LOC107965276 Neighboring gene microRNA mir-14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential expression of endogenous plant cell wall degrading enzyme genes in the stick insect (Phasmatodea) midgut. Shelomi M, et al. BMC Genomics, 2014 Oct 21. PMID 25331961, Free PMC Article
  2. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
  3. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit
Names
super sex combs

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037648.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    2835802..2850299
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003249371.4 → XP_003249419.1  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X2

    UniProtKB/TrEMBL
    A0A7M7G9X9, A0A8B6XST5
    Conserved Domains (10) summary
    cd05804
    Location:139 → 299
    StaR_like; StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been ...
    COG0457
    Location:223 → 480
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    COG3914
    Location:354 → 1040
    Spy; Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
    sd00006
    Location:245 → 272
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:108 → 141
    TPR_1; Tetratricopeptide repeat
    pfam13374
    Location:346 → 375
    TPR_10; Tetratricopeptide repeat
    pfam13414
    Location:108 → 173
    TPR_11; TPR repeat
    pfam13424
    Location:172 → 242
    TPR_12; Tetratricopeptide repeat
    pfam13431
    Location:300 → 332
    TPR_17; Tetratricopeptide repeat
    pfam13844
    Location:572 → 1037
    Glyco_transf_41; Glycosyl transferase family 41

  2. XM_623817.6 → XP_623820.2  UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit isoform X1

    UniProtKB/TrEMBL
    A0A7M7R9W3, A0A8B9B6T3
    Conserved Domains (3) summary
    TIGR02917
    Location:82 → 514
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:275 → 302
    TPR; TPR repeat [structural motif]
    pfam13844
    Location:525 → 1059
    Glyco_transf_41; Glycosyl transferase family 41
Nucleotide Protein Strain
Heading Accession and Version

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