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LOC5513198 multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5513198, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5513198
Gene description
multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3
Locus tag
NEMVEDRAFT_v1g234891
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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See LOC5513198 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
22
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 3 NC_064036.1 (9328692..9342294)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834343.1 (133536..147826)

Chromosome 3 - NC_064036.1Genomic Context describing neighboring genes Neighboring gene Y-box-binding protein 1 Neighboring gene mediator of RNA polymerase II transcription subunit 18 Neighboring gene uncharacterized LOC116618723 Neighboring gene recombining binding protein suppressor of hairless

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables L-ascorbic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables procollagen-lysine 5-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064036.1 Reference jaNemVect1.1

    Range
    9328692..9342294
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032382726.2 → XP_032238617.2  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 isoform X1

  2. XM_032382727.2 → XP_032238618.2  multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials