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LOC5511385 protein O-mannosyl-transferase TMTC2 [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5511385, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5511385
Gene description
protein O-mannosyl-transferase TMTC2
Locus tag
NEMVEDRAFT_v1g109754
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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See LOC5511385 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
17
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 15 NC_064048.1 (6283351..6301893, complement)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834318.1 (688902..709665, complement)

Chromosome 15 - NC_064048.1Genomic Context describing neighboring genes Neighboring gene deoxyribose-phosphate aldolase Neighboring gene translation initiation factor IF-2 Neighboring gene coatomer subunit alpha-like Neighboring gene receptor of activated protein C kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase TMTC2
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064048.1 Reference jaNemVect1.1

    Range
    6283351..6301893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032380715.2 → XP_032236606.2  protein O-mannosyl-transferase TMTC2 isoform X3

  2. XM_048722532.1 → XP_048578489.1  protein O-mannosyl-transferase TMTC2 isoform X1

  3. XM_048722534.1 → XP_048578491.1  protein O-mannosyl-transferase TMTC2 isoform X3

  4. XM_048722533.1 → XP_048578490.1  protein O-mannosyl-transferase TMTC2 isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials