U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC5507861 heparan-sulfate 6-O-sulfotransferase 1-B [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5507861, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC5507861
Gene description
heparan-sulfate 6-O-sulfotransferase 1-B
Locus tag
NEMVEDRAFT_v1g237290
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC5507861 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 7 NC_064040.1 (13959289..13961271, complement)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834250.1 (45855..47753, complement)

Chromosome 7 - NC_064040.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC5507870 Neighboring gene 26S proteasome non-ATPase regulatory subunit 8 Neighboring gene protein FAM98A Neighboring gene protein HEXIM1 Neighboring gene fasciculation and elongation protein zeta-1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
heparan-sulfate 6-O-sulfotransferase 1-B
Names
predicted protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064040.1 Reference jaNemVect1.1

    Range
    13959289..13961271 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001628443.3 → XP_001628493.2  heparan-sulfate 6-O-sulfotransferase 1-B

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials