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LOC5507528 receptor-type tyrosine-protein phosphatase T [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5507528, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5507528
Gene description
receptor-type tyrosine-protein phosphatase T
Locus tag
NEMVEDRAFT_v1g222148
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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See LOC5507528 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
43
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 1 NC_064034.1 (10670684..10691327)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834241.1 (437576..455981)

Chromosome 1 - NC_064034.1Genomic Context describing neighboring genes Neighboring gene neuronal pentraxin-1 Neighboring gene uncharacterized LOC116614780 Neighboring gene glucosidase 2 subunit beta Neighboring gene uncharacterized LOC5501433 Neighboring gene receptor-type tyrosine-protein phosphatase epsilon Neighboring gene uncharacterized LOC125563159 Neighboring gene uncharacterized LOC5505231

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
receptor-type tyrosine-protein phosphatase F; receptor-type tyrosine-protein phosphatase T
Names
predicted protein
retinoschisin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064034.1 Reference jaNemVect1.1

    Range
    10670684..10691327
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_048728043.1 → XP_048584000.1  receptor-type tyrosine-protein phosphatase F isoform X1

  2. XM_048728046.1 → XP_048584003.1  receptor-type tyrosine-protein phosphatase T isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials