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LOC5506837 zeta-sarcoglycan [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5506837, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5506837
Gene description
zeta-sarcoglycan
Locus tag
NEMVEDRAFT_v1g246044
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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See LOC5506837 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
6
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 10 NC_064043.1 (8259840..8264699)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834221.1 (206561..211415, complement)

Chromosome 10 - NC_064043.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116614365 Neighboring gene octopamine receptor Neighboring gene phosphorylase b kinase regulatory subunit alpha, liver isoform Neighboring gene uncharacterized LOC5506836 Neighboring gene protein FAM47E Neighboring gene sterol 26-hydroxylase, mitochondrial Neighboring gene circadian locomoter output cycles protein kaput

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064043.1 Reference jaNemVect1.1

    Range
    8259840..8264699
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001627471.3 → XP_001627521.1  zeta-sarcoglycan

    See identical proteins and their annotated locations for XP_001627521.1

    UniProtKB/TrEMBL
    A7SLK0
    Conserved Domains (1) summary
    pfam04790
    Location:29 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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