atpaf1 ATP synthase mitochondrial F1 complex assembly factor 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: atpaf1provided by ZNC
Official Full Name: ATP synthase mitochondrial F1 complex assembly factor 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-030219-10
See related: Ensembl:ENSDARG00000042799 AllianceGenome:ZFIN:ZDB-GENE-030219-10
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: id:ibd1136; zgc:110583; si:dkey-171o17.2
Summary: Predicted to enable protein-containing complex stabilizing activity. Predicted to be involved in mitochondrial proton-transporting ATP synthase complex assembly. Predicted to act upstream of or within protein-containing complex assembly. Predicted to be located in mitochondrial inner membrane. Predicted to be active in mitochondrion. Is expressed in immature eye and optic tectum. Orthologous to human ATPAF1 (ATP synthase mitochondrial F1 complex assembly factor 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 22

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	22	NC_007133.7 (17192767..17201395)
105	previous assembly	GRCz10 (GCF_000002035.5)	22	NC_007133.6 (17166499..17175125)

Chromosome 22 - NC_007133.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info
enables protein-containing complex stabilizing activity	ISS Inferred from Sequence or Structural Similarity more info

Process	Evidence Code	Pubs
involved_in mitochondrial proton-transporting ATP synthase complex assembly	IBA Inferred from Biological aspect of Ancestor more info
involved_in mitochondrial proton-transporting ATP synthase complex assembly	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within protein-containing complex assembly	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrial inner membrane	IEA Inferred from Electronic Annotation more info
located_in mitochondrial inner membrane	ISS Inferred from Sequence or Structural Similarity more info
is_active_in mitochondrion	IBA Inferred from Biological aspect of Ancestor more info
located_in mitochondrion	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: ATP synthase mitochondrial F1 complex assembly factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001017907.2 → NP_001017907.2 ATP synthase mitochondrial F1 complex assembly factor 1

See identical proteins and their annotated locations for NP_001017907.2

Status: PROVISIONAL

Source sequence(s)

BC092940

UniProtKB/Swiss-Prot

Q1L987, Q568A9

Related

ENSDARP00000110144.2, ENSDART00000130810.3

Conserved Domains (1) summary

pfam06644
Location:58 → 289

ATP11; ATP11 protein

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007133.7 Reference GRCz11 Primary Assembly

Range

17192767..17201395

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021469326.2 → XP_021325001.1 ATP synthase mitochondrial F1 complex assembly factor 1 isoform X1

UniProtKB/TrEMBL

A0A8M9PRS4

Conserved Domains (1) summary

pfam06644
Location:7 → 185

ATP11; ATP11 protein