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LOC5505248 congested-like trachea protein [ Nematostella vectensis (starlet sea anemone) ]

Gene ID: 5505248, updated on 30-Nov-2023

Summary

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Gene symbol
LOC5505248
Gene description
congested-like trachea protein
Locus tag
NEMVEDRAFT_v1g173246
Gene type
protein coding
RefSeq status
MODEL
Organism
Nematostella vectensis
Lineage
Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella
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Genomic context

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See LOC5505248 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
101 current jaNemVect1.1 (GCF_932526225.1) 1 NC_064034.1 (10972656..10974775)
100 previous assembly ASM20922v1 (GCF_000209225.1) Unplaced Scaffold NW_001834172.1 (159019..160872, complement)

Chromosome 1 - NC_064034.1Genomic Context describing neighboring genes Neighboring gene endo-1,4-beta-xylanase 3 Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 12 Neighboring gene A disintegrin and metalloproteinase with thrombospondin motifs 7 Neighboring gene protein polybromo-1 Neighboring gene uncharacterized LOC116607136 Neighboring gene uncharacterized LOC125563175 Neighboring gene uncharacterized LOC5505234

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acyl carnitine transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carnitine transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrial envelope IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
congested-like trachea protein
Names
predicted protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nematostella vectensis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference jaNemVect1.1

Genomic

  1. NC_064034.1 Reference jaNemVect1.1

    Range
    10972656..10974775
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001626043.3 → XP_001626093.2  congested-like trachea protein

  2. XM_032373654.2 → XP_032229545.2  congested-like trachea protein

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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