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abo ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) gene 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 550054, updated on 5-Oct-2024

Summary

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Official Symbol
aboprovided by Xenbase
Official Full Name
ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) gene 1provided by Xenbase
Primary source
Xenbase:XB-GENE-5721534
See related
Ensembl:ENSXETG00000005013
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
abo.1
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Genomic context

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See abo in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (9994169..10032803)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683446.1 (193685..232300, complement)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene alpha-1,4-N-acetylglucosaminyltransferase Neighboring gene surfeit 6 Neighboring gene ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) gene 2 Neighboring gene ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase; transferase B, alpha 1-3-galactosyltransferase) gene 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
histo-blood group ABO system transferase
NP_001017300.1
XP_012823948.1
XP_012823949.1
XP_012823950.1
XP_012823951.1
XP_012823952.1
XP_031746345.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001017300.2 → NP_001017300.1  histo-blood group ABO system transferase

    See identical proteins and their annotated locations for NP_001017300.1

    Status: PROVISIONAL

    Source sequence(s)
    CR855597
    UniProtKB/TrEMBL
    A0A6I8RBQ2, Q28DB6
    Conserved Domains (1) summary
    cl11394
    Location:46 → 330
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    9994169..10032803
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012968494.3 → XP_012823948.1  histo-blood group ABO system transferase isoform X1

    See identical proteins and their annotated locations for XP_012823948.1

    UniProtKB/TrEMBL
    A0A6I8RBQ2, A0A7D9NJP4
    Related
    ENSXETP00000115362.1, ENSXETT00000122871.1
    Conserved Domains (1) summary
    cl11394
    Location:66 → 354
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_012968498.3 → XP_012823952.1  histo-blood group ABO system transferase isoform X2

    UniProtKB/TrEMBL
    A0A1B8Y5A3, A0A6I8RBQ2
    Related
    ENSXETP00000110010.1, ENSXETT00000117743.1
    Conserved Domains (1) summary
    cl11394
    Location:46 → 330
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_012968497.3 → XP_012823951.1  histo-blood group ABO system transferase isoform X1

    See identical proteins and their annotated locations for XP_012823951.1

    UniProtKB/TrEMBL
    A0A6I8RBQ2, A0A7D9NJP4
    Conserved Domains (1) summary
    cl11394
    Location:66 → 354
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_012968495.3 → XP_012823949.1  histo-blood group ABO system transferase isoform X1

    See identical proteins and their annotated locations for XP_012823949.1

    UniProtKB/TrEMBL
    A0A6I8RBQ2, A0A7D9NJP4
    Conserved Domains (1) summary
    cl11394
    Location:66 → 354
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  5. XM_012968496.3 → XP_012823950.1  histo-blood group ABO system transferase isoform X1

    See identical proteins and their annotated locations for XP_012823950.1

    UniProtKB/TrEMBL
    A0A6I8RBQ2, A0A7D9NJP4
    Related
    ENSXETP00000113788.1, ENSXETT00000106943.1
    Conserved Domains (1) summary
    cl11394
    Location:66 → 354
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  6. XM_031890485.1 → XP_031746345.1  histo-blood group ABO system transferase isoform X1

    UniProtKB/TrEMBL
    A0A6I8RBQ2, A0A7D9NJP4
    Conserved Domains (1) summary
    cl11394
    Location:66 → 354
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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