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SS1G_01602 similar to autophagy protein 8 [ Sclerotinia sclerotiorum 1980 UF-70 ]

Gene ID: 5493212, updated on 16-Nov-2023

Summary

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Gene symbol
SS1G_01602
Gene description
similar to autophagy protein 8
Locus tag
SS1G_01602
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Sclerotinia sclerotiorum 1980 UF-70 (strain: 1980)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Helotiales; Sclerotiniaceae; Sclerotinia
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Genomic context

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See SS1G_01602 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
3

NW_001820834.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001820834.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genomic analysis of the necrotrophic fungal pathogens Sclerotinia sclerotiorum and Botrytis cinerea. Amselem J, et al. PLoS Genet, 2011 Aug. PMID 21876677, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylethanolamine binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to nitrogen starvation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in macroautophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in fungal-type vacuole membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
similar to autophagy protein 8
Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001820834.1 Reference assembly

    Range
    1354656..1355315 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001597358.1 → XP_001597408.1  hypothetical protein SS1G_01602 [Sclerotinia sclerotiorum 1980 UF-70]

    See identical proteins and their annotated locations for XP_001597408.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A7E8H4
    UniProtKB/TrEMBL
    A0A1D9PTE5
    Conserved Domains (1) summary
    cd16128
    Location:11 → 113
    Ubl_ATG8; ubiquitin-like (Ubl) domain found in Saccharomyces cerevisiae Atg8p and related proteins; sub-family of the autophagy-related 8 (ATG8) family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A7E8H4.1

Gene LinkOut

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Molecular Biology Databases
Research Materials