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SS1G_02501 hypothetical protein [ Sclerotinia sclerotiorum 1980 UF-70 ]

Gene ID: 5492639, updated on 26-Jun-2024

Summary

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Gene symbol
SS1G_02501
Gene description
hypothetical protein
Locus tag
SS1G_02501
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Sclerotinia sclerotiorum 1980 UF-70 (strain: 1980)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Helotiales; Sclerotiniaceae; Sclerotinia
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Genomic context

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See SS1G_02501 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
3

NW_001820833.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001820833.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fungal-type cell wall organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in fungal-type cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001820833.1 Reference assembly

    Range
    1055838..1057289
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001596231.1 → XP_001596281.1  hypothetical protein SS1G_02501 [Sclerotinia sclerotiorum 1980 UF-70]

    See identical proteins and their annotated locations for XP_001596281.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1D9Q1E6, A7EB15
    Conserved Domains (2) summary
    cd02183
    Location:84 → 293
    GH16_fungal_CRH1_transglycosylase; glycosylphosphatidylinositol-glucanosyltransferase
    cd06923
    Location:19 → 65
    ChtBD1_GH16; Hevein or Type 1 chitin binding domain subfamily that co-occurs with family 16 glycosyl hydrolases
Nucleotide Protein
Heading Accession and Version

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