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celf3 CUGBP, Elav-like family member 3 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 549245, updated on 4-Nov-2024

Summary

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Official Symbol
celf3provided by Xenbase
Official Full Name
CUGBP, Elav-like family member 3provided by Xenbase
Primary source
Xenbase:XB-GENE-5796618
See related
Ensembl:ENSXETG00000037012 AllianceGenome:Xenbase:XB-GENE-5796618
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
etr1; cagh4; erda4; etr-1; tnrc4; brunol1; celf3-a; celf3-b
Summary
Predicted to enable RNA binding activity. Predicted to act upstream of or within mRNA processing. Predicted to be located in cytoplasm and nucleus. Orthologous to human CELF3 (CUGBP Elav-like family member 3). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See celf3 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
15
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 8 NC_030684.2 (144652838..144692658)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016683558.1 (199863..200254, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) Unplaced Scaffold NW_016684855.1 (1436..8253)

Chromosome 8 - NC_030684.2Genomic Context describing neighboring genes Neighboring gene mitochondrial ribosomal protein L9 Neighboring gene regulatory subunit of type II PKA R-subunit domain containing 1 Neighboring gene sorting nexin family member 27 Neighboring gene tuftelin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within mRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
CUGBP Elav-like family member 3
Names
trinucleotide repeat containing 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001016491.2 → NP_001016491.1  CUGBP Elav-like family member 3

    See identical proteins and their annotated locations for NP_001016491.1

    Status: PROVISIONAL

    Source sequence(s)
    CR760829
    UniProtKB/TrEMBL
    A0A6I8RUU3, Q28HL6
    Related
    ENSXETP00000088632.2, ENSXETT00000077843.2
    Conserved Domains (2) summary
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030684.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    144652838..144692658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031890454.1 → XP_031746314.1  CUGBP Elav-like family member 3 isoform X1

    UniProtKB/TrEMBL
    A0A803J607, A8KBC9
    Related
    ENSXETP00000104678.1, ENSXETT00000124413.1
    Conserved Domains (4) summary
    TIGR01645
    Location:8 → 375
    half-pint; poly-U binding splicing factor, half-pint family
    cd12639
    Location:373 → 451
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  2. XM_031890456.1 → XP_031746316.1  CUGBP Elav-like family member 3 isoform X2

    UniProtKB/TrEMBL
    A0A803J607, A0A8J1IP73
    Related
    ENSXETP00000103250.1, ENSXETT00000115963.1
    Conserved Domains (3) summary
    cd12639
    Location:369 → 447
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

  3. XM_031890455.1 → XP_031746315.1  CUGBP Elav-like family member 3 isoform X1

    UniProtKB/TrEMBL
    A0A803J607, A8KBC9
    Conserved Domains (4) summary
    TIGR01645
    Location:8 → 375
    half-pint; poly-U binding splicing factor, half-pint family
    cd12639
    Location:373 → 451
    RRM3_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12632
    Location:2 → 88
    RRM1_CELF3_4_5_6; RNA recognition motif 1 (RRM1) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins
    cd12635
    Location:94 → 174
    RRM2_CELF3_4_5_6; RNA recognition motif 2 (RRM2) found in CUGBP Elav-like family member CELF-3, CELF-4, CELF-5, CELF-6 and similar proteins

RNA

  1. XR_004219470.1 RNA Sequence

  2. XR_004219469.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

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