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rfc4 replication factor C subunit 4 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 549117, updated on 4-Nov-2024

Summary

Official Symbol
rfc4provided by Xenbase
Official Full Name
replication factor C subunit 4provided by Xenbase
Primary source
Xenbase:XB-GENE-955724
See related
Ensembl:ENSXETG00000019391 AllianceGenome:Xenbase:XB-GENE-955724
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable ATP binding activity; ATP hydrolysis activity; and DNA binding activity. Predicted to act upstream of or within DNA replication. Orthologous to human RFC4 (replication factor C subunit 4). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See rfc4 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (105886997..105908331)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (98025009..98046215, complement)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene probable cation-transporting ATPase 13A4 Neighboring gene uncharacterized LOC105947296 Neighboring gene MCF.2 cell line derived transforming sequence like Neighboring gene UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 5 Neighboring gene small nucleolar RNA SNORA63 Neighboring gene small nucleolar RNA SNORA63 Neighboring gene eukaryotic translation initiation factor 4A2

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within DNA replication IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
replication factor C subunit 4
Names
replication factor C (activator 1) 4, 37kDa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001016363.2NP_001016363.1  replication factor C subunit 4

    See identical proteins and their annotated locations for NP_001016363.1

    Status: PROVISIONAL

    Source sequence(s)
    CR761294
    UniProtKB/TrEMBL
    A0A6I8QR82, F6RNS6, Q28GP1
    Related
    ENSXETP00000042009.4, ENSXETT00000042009.5
    Conserved Domains (1) summary
    PRK00440
    Location:38353
    rfc; replication factor C small subunit; Reviewed

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    105886997..105908331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)