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ppp1r3b protein phosphatase 1 regulatory subunit 3B [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 548704, updated on 4-Nov-2024

Summary

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Official Symbol
ppp1r3bprovided by Xenbase
Official Full Name
protein phosphatase 1 regulatory subunit 3Bprovided by Xenbase
Primary source
Xenbase:XB-GENE-956777
See related
Ensembl:ENSXETG00000008154 AllianceGenome:Xenbase:XB-GENE-956777
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
ppp1r3b-a; ppp1r3b-b
Summary
Predicted to enable glycogen binding activity and protein phosphatase 1 binding activity. Predicted to be involved in regulation of glycogen biosynthetic process. Predicted to act upstream of or within glycogen metabolic process and regulation of glycogen catabolic process. Predicted to be part of protein phosphatase type 1 complex. Orthologous to human PPP1R3B (protein phosphatase 1 regulatory subunit 3B). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See ppp1r3b in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 1 NC_030677.2 (97982210..97991219)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 1 NC_030677.1 (79028662..79037703)

Chromosome 1 - NC_030677.2Genomic Context describing neighboring genes Neighboring gene dual specificity phosphatase 4 Neighboring gene tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase Neighboring gene exoribonuclease 1 Neighboring gene deoxyhypusine hydroxylase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables glycogen binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein phosphatase 1 binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein phosphatase regulator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within glycogen metabolic process IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of glycogen biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within regulation of glycogen catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of protein phosphatase type 1 complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of protein phosphatase type 1 complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein phosphatase 1 regulatory subunit 3B
Names
protein phosphatase 1, regulatory (inhibitor) subunit 3B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001015950.2 → NP_001015950.1  protein phosphatase 1 regulatory subunit 3B

    See identical proteins and their annotated locations for NP_001015950.1

    Status: PROVISIONAL

    Source sequence(s)
    CR848480
    UniProtKB/TrEMBL
    A0A803KAD1, B3DL49
    Related
    ENSXETP00000017880.3, ENSXETT00000017880.4
    Conserved Domains (1) summary
    pfam03370
    Location:123 → 228
    CBM_21; Carbohydrate/starch-binding module (family 21)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    97982210..97991219
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012961856.3 → XP_012817310.1  protein phosphatase 1 regulatory subunit 3B isoform X1

    See identical proteins and their annotated locations for XP_012817310.1

    UniProtKB/Swiss-Prot
    Q28E28
    UniProtKB/TrEMBL
    A0A803KAD1
    Conserved Domains (1) summary
    pfam03370
    Location:144 → 249
    CBM_21; Carbohydrate/starch-binding module (family 21)

  2. XM_012961859.3 → XP_012817313.1  protein phosphatase 1 regulatory subunit 3B isoform X1

    See identical proteins and their annotated locations for XP_012817313.1

    UniProtKB/Swiss-Prot
    Q28E28
    UniProtKB/TrEMBL
    A0A803KAD1
    Conserved Domains (1) summary
    pfam03370
    Location:144 → 249
    CBM_21; Carbohydrate/starch-binding module (family 21)

  3. XM_012961853.2 → XP_012817307.1  protein phosphatase 1 regulatory subunit 3B isoform X1

    See identical proteins and their annotated locations for XP_012817307.1

    UniProtKB/Swiss-Prot
    Q28E28
    UniProtKB/TrEMBL
    A0A803KAD1
    Conserved Domains (1) summary
    pfam03370
    Location:144 → 249
    CBM_21; Carbohydrate/starch-binding module (family 21)

  4. XM_012961846.2 → XP_012817300.1  protein phosphatase 1 regulatory subunit 3B isoform X1

    See identical proteins and their annotated locations for XP_012817300.1

    UniProtKB/Swiss-Prot
    Q28E28
    UniProtKB/TrEMBL
    A0A803KAD1
    Related
    ENSXETP00000110136.1, ENSXETT00000108666.1
    Conserved Domains (1) summary
    pfam03370
    Location:144 → 249
    CBM_21; Carbohydrate/starch-binding module (family 21)

  5. XM_012961841.2 → XP_012817295.1  protein phosphatase 1 regulatory subunit 3B isoform X1

    See identical proteins and their annotated locations for XP_012817295.1

    UniProtKB/Swiss-Prot
    Q28E28
    UniProtKB/TrEMBL
    A0A803KAD1
    Conserved Domains (1) summary
    pfam03370
    Location:144 → 249
    CBM_21; Carbohydrate/starch-binding module (family 21)

  6. XM_012961849.2 → XP_012817303.1  protein phosphatase 1 regulatory subunit 3B isoform X1

    See identical proteins and their annotated locations for XP_012817303.1

    UniProtKB/Swiss-Prot
    Q28E28
    UniProtKB/TrEMBL
    A0A803KAD1
    Conserved Domains (1) summary
    pfam03370
    Location:144 → 249
    CBM_21; Carbohydrate/starch-binding module (family 21)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q28E28.1 GenPept UniProtKB/Swiss-Prot:Q28E28

Gene LinkOut

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