U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

chst12 carbohydrate (chondroitin 4) sulfotransferase 12 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 548703, updated on 4-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
chst12provided by Xenbase
Official Full Name
carbohydrate (chondroitin 4) sulfotransferase 12provided by Xenbase
Primary source
Xenbase:XB-GENE-1014616
See related
Ensembl:ENSXETG00000034565 AllianceGenome:Xenbase:XB-GENE-1014616
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to enable sulfotransferase activity. Predicted to be involved in proteoglycan biosynthetic process. Predicted to act upstream of or within carbohydrate biosynthetic process. Predicted to be located in Golgi membrane. Orthologous to human CHST12 (carbohydrate sulfotransferase 12). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See chst12 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
5
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 9 NC_030685.2 (31167737..31179180)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 9 NC_030685.1 (25294627..25321339)

Chromosome 9 - NC_030685.2Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 3 subunit B Neighboring gene kinesin family member 19 like Neighboring gene uncharacterized LOC105948511 Neighboring gene orexin receptor type 2-like Neighboring gene galectin-related inter-fiber protein

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables sulfotransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables transferase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
  
involved_in proteoglycan biosynthetic process IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
carbohydrate sulfotransferase 12
NP_001015949.1
XP_012825848.1
XP_012825849.1
XP_012825850.1
XP_012825851.1
XP_012825852.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001015949.2 → NP_001015949.1  carbohydrate sulfotransferase 12

    See identical proteins and their annotated locations for NP_001015949.1

    Status: PROVISIONAL

    Source sequence(s)
    CR848482
    UniProtKB/TrEMBL
    F6UW13, Q28E26
    Related
    ENSXETP00000112856.1, ENSXETT00000123396.1
    Conserved Domains (1) summary
    pfam03567
    Location:165 → 411
    Sulfotransfer_2; Sulfotransferase family

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030685.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    31167737..31179180
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012970397.3 → XP_012825851.1  carbohydrate sulfotransferase 12 isoform X1

    See identical proteins and their annotated locations for XP_012825851.1

    UniProtKB/TrEMBL
    F6UW13, Q28E26
    Related
    ENSXETP00000118137.1, ENSXETT00000117194.1
    Conserved Domains (1) summary
    pfam03567
    Location:165 → 411
    Sulfotransfer_2; Sulfotransferase family

  2. XM_012970398.3 → XP_012825852.1  carbohydrate sulfotransferase 12 isoform X1

    See identical proteins and their annotated locations for XP_012825852.1

    UniProtKB/TrEMBL
    F6UW13, Q28E26
    Conserved Domains (1) summary
    pfam03567
    Location:165 → 411
    Sulfotransfer_2; Sulfotransferase family

  3. XM_012970394.3 → XP_012825848.1  carbohydrate sulfotransferase 12 isoform X1

    See identical proteins and their annotated locations for XP_012825848.1

    UniProtKB/TrEMBL
    F6UW13, Q28E26
    Related
    ENSXETP00000101926.1, ENSXETT00000113543.1
    Conserved Domains (1) summary
    pfam03567
    Location:165 → 411
    Sulfotransfer_2; Sulfotransferase family

  4. XM_012970396.3 → XP_012825850.1  carbohydrate sulfotransferase 12 isoform X1

    See identical proteins and their annotated locations for XP_012825850.1

    UniProtKB/TrEMBL
    F6UW13, Q28E26
    Related
    ENSXETP00000105149.1, ENSXETT00000106527.1
    Conserved Domains (1) summary
    pfam03567
    Location:165 → 411
    Sulfotransfer_2; Sulfotransferase family

  5. XM_012970395.3 → XP_012825849.1  carbohydrate sulfotransferase 12 isoform X1

    See identical proteins and their annotated locations for XP_012825849.1

    UniProtKB/TrEMBL
    F6UW13, Q28E26
    Related
    ENSXETP00000112705.1, ENSXETT00000122889.1
    Conserved Domains (1) summary
    pfam03567
    Location:165 → 411
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.