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entpd7 ectonucleoside triphosphate diphosphohydrolase 7 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 548672, updated on 17-Aug-2024

Summary

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Official Symbol
entpd7provided by Xenbase
Official Full Name
ectonucleoside triphosphate diphosphohydrolase 7provided by Xenbase
Primary source
Xenbase:XB-GENE-973424
See related
Ensembl:ENSXETG00000003746
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
LALP1; NTPDase7
Orthologs
human mouse all
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Genomic context

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See entpd7 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
14
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (35373827..35392998)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (27137844..27156936)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene NK3 homeobox 3 Neighboring gene solute carrier family 25 member 28 Neighboring gene ATPase, H+ transporting V0 subunit e2 Neighboring gene cytochrome c oxidase assembly homolog COX15

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comparative genomic and expression analysis of the conserved NTPDase gene family in Xenopus. Massé K, et al. Genomics, 2006 Mar. PMID 16380227
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables CTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables CTPase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables GDP phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
enables UDP phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables ribonucleoside triphosphate phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables ribonucleoside triphosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
enables ribonucleoside triphosphate phosphatase activity ISS
Inferred from Sequence or Structural Similarity
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within CTP catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in CTP metabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within GTP metabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in UDP catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within UTP catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within nucleobase-containing small molecule catabolic process ISS
Inferred from Sequence or Structural Similarity
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle membrane IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasmic vesicle membrane ISS
Inferred from Sequence or Structural Similarity
more info
  
is_active_in membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ectonucleoside triphosphate diphosphohydrolase 7
Names
NTPDase 7
NP_001015918.1
XP_012822005.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001015918.2 → NP_001015918.1  ectonucleoside triphosphate diphosphohydrolase 7

    See identical proteins and their annotated locations for NP_001015918.1

    Status: PROVISIONAL

    Source sequence(s)
    CR926412
    UniProtKB/Swiss-Prot
    Q28CF8, Q2QDC5
    UniProtKB/TrEMBL
    B7ZSS2, F7AY34
    Related
    ENSXETP00000008111.4, ENSXETT00000008111.5
    Conserved Domains (1) summary
    cl17037
    Location:84 → 533
    NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    35373827..35392998
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012966551.3 → XP_012822005.2  ectonucleoside triphosphate diphosphohydrolase 7 isoform X1

    UniProtKB/Swiss-Prot
    Q28CF8, Q2QDC5
    UniProtKB/TrEMBL
    B7ZSS2, F7AY34
    Conserved Domains (1) summary
    cl17037
    Location:84 → 533
    NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q28CF8.1 GenPept UniProtKB/Swiss-Prot:Q28CF8

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.