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SS1G_08265 chitin synthase 3 [ Sclerotinia sclerotiorum 1980 UF-70 ]

Gene ID: 5486614, updated on 26-Jun-2024

Summary

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Gene symbol
SS1G_08265
Gene description
chitin synthase 3
Locus tag
SS1G_08265
Gene type
protein coding
RNA name
chitin synthase 3
RefSeq status
PROVISIONAL
Organism
Sclerotinia sclerotiorum 1980 UF-70 (strain: 1980)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Helotiales; Sclerotiniaceae; Sclerotinia
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Genomic context

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See SS1G_08265 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
5

NW_001820825.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001820825.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell septum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
chitin synthase 3

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001820825.1 Reference assembly

    Range
    374711..378486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001590475.1 → XP_001590525.1  chitin synthase 3 [Sclerotinia sclerotiorum 1980 UF-70]

    See identical proteins and their annotated locations for XP_001590525.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1D9QD04, A7ESG0
    Conserved Domains (4) summary
    COG1215
    Location:563 → 898
    BcsA; Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase [Cell motility]
    pfam01644
    Location:453 → 614
    Chitin_synth_1; Chitin synthase
    pfam08407
    Location:381 → 451
    Chitin_synth_1N; Chitin synthase N-terminal
    cl11394
    Location:553 → 682
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials