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gpaa1 glycosylphosphatidylinositol anchor attachment 1 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 548526, updated on 4-Nov-2024

Summary

Official Symbol
gpaa1provided by Xenbase
Official Full Name
glycosylphosphatidylinositol anchor attachment 1provided by Xenbase
Primary source
Xenbase:XB-GENE-974957
See related
Ensembl:ENSXETG00000004682 AllianceGenome:Xenbase:XB-GENE-974957
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Summary
Predicted to be located in membrane. Predicted to be part of GPI-anchor transamidase complex. Orthologous to human GPAA1 (glycosylphosphatidylinositol anchor attachment 1). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
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Genomic context

See gpaa1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
13
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (151224131..151235566)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (134368677..134379493)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene alpha-1,4-N-acetylglucosaminyltransferase Neighboring gene uncharacterized XB5774338 Neighboring gene protein brambleberry-like Neighboring gene pyrroline-5-carboxylate reductase 3

Genomic regions, transcripts, and products

General protein information

Preferred Names
glycosylphosphatidylinositol anchor attachment 1 protein
Names
glycosylphosphatidylinositol anchor attachment protein 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001015809.1NP_001015809.1  glycosylphosphatidylinositol anchor attachment 1 protein

    See identical proteins and their annotated locations for NP_001015809.1

    Status: PROVISIONAL

    Source sequence(s)
    BC090090
    UniProtKB/TrEMBL
    F6TT08, Q5EB45
    Related
    ENSXETP00000010178.5, ENSXETT00000010178.5
    Conserved Domains (1) summary
    pfam04114
    Location:126609
    Gaa1; Gaa1-like, GPI transamidase component

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    151224131..151235566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)