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asph aspartate beta-hydroxylase [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 548451, updated on 5-Mar-2024

Summary

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Official Symbol
asphprovided by Xenbase
Official Full Name
aspartate beta-hydroxylaseprovided by Xenbase
Primary source
Xenbase:XB-GENE-987977
See related
Ensembl:ENSXETG00000021644
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
aah; bah; jctn; junctin
Orthologs
human mouse all
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Genomic context

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See asph in Genome Data Viewer
Location:
chromosome: 6
Exon count:
42
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 6 NC_030682.2 (117424492..117518829, complement)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 6 NC_030682.1 (102610809..102635150, complement)

Chromosome 6 - NC_030682.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC116411593 Neighboring gene uncharacterized LOC116411598 Neighboring gene clavesin 1 Neighboring gene Sodium/potassium transporting ATPase interacting 3 Neighboring gene minichromosome maintenance domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC107896

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase
NP_001015734.2
XP_031759210.1
XP_031759211.1
XP_031759212.1
XP_031759213.1
XP_031759214.1
XP_031759215.1
XP_031759216.1
XP_031759217.1
XP_031759218.1
XP_031759219.1
XP_031759220.1
XP_031759221.1
XP_031759222.1
XP_031759223.1
XP_031759225.1
XP_031759226.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001015734.2 → NP_001015734.2  aspartyl/asparaginyl beta-hydroxylase

    Status: VALIDATED

    Source sequence(s)
    BC089668
    UniProtKB/TrEMBL
    A0A8J0PG59, F7A811, Q5FW15
    Conserved Domains (1) summary
    pfam05279
    Location:12 → 185
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030682.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    117424492..117518829 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031903358.1 → XP_031759218.1  aspartyl/asparaginyl beta-hydroxylase isoform X9

    UniProtKB/TrEMBL
    A0A6I8Q8J3, A0A8J1JMV7
    Conserved Domains (5) summary
    pfam05279
    Location:27 → 279
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG5271
    Location:115 → 575
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR02917
    Location:599 → 749
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:680 → 706
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:849 → 1003
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  2. XM_031903359.1 → XP_031759219.1  aspartyl/asparaginyl beta-hydroxylase isoform X10

    UniProtKB/TrEMBL
    A0A6I8Q8J3, A0A8J1JMW1
    Conserved Domains (5) summary
    pfam05279
    Location:27 → 284
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG5271
    Location:144 → 566
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR02917
    Location:594 → 744
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:675 → 701
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:844 → 998
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  3. XM_031903354.1 → XP_031759214.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

    UniProtKB/TrEMBL
    A0A6I8Q8J3, A0A6I8S9Q9
    Related
    ENSXETP00000089915.2, ENSXETT00000081822.2
    Conserved Domains (5) summary
    pfam05279
    Location:27 → 284
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG5271
    Location:144 → 580
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR02917
    Location:608 → 758
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:689 → 715
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:858 → 1012
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  4. XM_031903352.1 → XP_031759212.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    UniProtKB/TrEMBL
    A0A6I8Q8J3, A0A8J1JMV3
    Conserved Domains (5) summary
    pfam05279
    Location:27 → 284
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG5271
    Location:115 → 595
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR02917
    Location:619 → 769
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:700 → 726
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:869 → 1023
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  5. XM_031903356.1 → XP_031759216.1  aspartyl/asparaginyl beta-hydroxylase isoform X7

    UniProtKB/TrEMBL
    A0A6I8Q8J3, A0A6I8RBX0
    Related
    ENSXETP00000082474.2, ENSXETT00000099852.2
    Conserved Domains (5) summary
    pfam05279
    Location:27 → 269
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG5271
    Location:100 → 581
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR02917
    Location:605 → 755
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:686 → 712
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:855 → 1009
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  6. XM_031903357.1 → XP_031759217.1  aspartyl/asparaginyl beta-hydroxylase isoform X8

    UniProtKB/TrEMBL
    A0A6I8Q8J3, A0A6I8S9H0
    Related
    ENSXETP00000089298.2, ENSXETT00000099094.2
    Conserved Domains (5) summary
    pfam05279
    Location:27 → 266
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG5271
    Location:112 → 578
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR02917
    Location:602 → 752
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:683 → 709
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:852 → 1006
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  7. XM_031903351.1 → XP_031759211.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    UniProtKB/TrEMBL
    A0A6I8Q8J3, A0A8J1JRJ8
    Conserved Domains (5) summary
    pfam05279
    Location:27 → 283
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG5271
    Location:115 → 595
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR02917
    Location:619 → 769
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:700 → 726
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:869 → 1023
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  8. XM_031903355.1 → XP_031759215.1  aspartyl/asparaginyl beta-hydroxylase isoform X6

    UniProtKB/TrEMBL
    A0A6I8Q8J3, A0A8J1JQA1
    Conserved Domains (5) summary
    pfam05279
    Location:27 → 284
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG5271
    Location:144 → 578
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR02917
    Location:606 → 756
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:687 → 713
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:856 → 1010
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  9. XM_031903350.1 → XP_031759210.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q8J3, A0A6I8QPT2
    Related
    ENSXETP00000074310.2, ENSXETT00000100954.2
    Conserved Domains (5) summary
    pfam05279
    Location:27 → 284
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG5271
    Location:115 → 596
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR02917
    Location:620 → 770
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:701 → 727
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:870 → 1024
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  10. XM_031903353.1 → XP_031759213.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

    UniProtKB/TrEMBL
    A0A6I8Q8J3, F6RBK4
    Related
    ENSXETP00000046782.5, ENSXETT00000046782.5
    Conserved Domains (5) summary
    pfam05279
    Location:12 → 273
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG5271
    Location:104 → 585
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
    TIGR02917
    Location:609 → 759
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:690 → 716
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:859 → 1013
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  11. XM_031903361.1 → XP_031759221.1  aspartyl/asparaginyl beta-hydroxylase isoform X12

    UniProtKB/TrEMBL
    A0A8J1JRK8
    Conserved Domains (2) summary
    pfam05279
    Location:27 → 284
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG5271
    Location:115 → 470
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

  12. XM_031903360.1 → XP_031759220.1  aspartyl/asparaginyl beta-hydroxylase isoform X11

    UniProtKB/TrEMBL
    A0A6I8RSA8, A0A8J1JQA7
    Related
    ENSXETP00000085590.2, ENSXETT00000085972.2
    Conserved Domains (2) summary
    pfam05279
    Location:27 → 284
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
    COG5271
    Location:288 → 593
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

  13. XM_031903365.1 → XP_031759225.1  aspartyl/asparaginyl beta-hydroxylase isoform X15

    UniProtKB/TrEMBL
    A0A803JM89, F7A811, Q5FW15
    Related
    ENSXETP00000109096.1, ENSXETT00000115372.1
    Conserved Domains (1) summary
    pfam05279
    Location:27 → 196
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  14. XM_031903362.1 → XP_031759222.1  aspartyl/asparaginyl beta-hydroxylase isoform X13

    UniProtKB/TrEMBL
    A0A6I8SWJ0, A0A8J1JMW2
    Related
    ENSXETP00000099384.2, ENSXETT00000070951.2
    Conserved Domains (1) summary
    pfam05279
    Location:27 → 269
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  15. XM_031903363.1 → XP_031759223.1  aspartyl/asparaginyl beta-hydroxylase isoform X14

    UniProtKB/TrEMBL
    A0A8J1JMW3, F7A811, Q5FW15
    Conserved Domains (1) summary
    pfam05279
    Location:27 → 211
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region

  16. XM_031903366.1 → XP_031759226.1  aspartyl/asparaginyl beta-hydroxylase isoform X16

    UniProtKB/TrEMBL
    A0A8J1JRL5
    Conserved Domains (1) summary
    pfam05279
    Location:27 → 111
    Asp-B-Hydro_N; Aspartyl beta-hydroxylase N-terminal region
Nucleotide Protein Strain
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