lpcat4 lysophosphatidylcholine acyltransferase 4 [Xenopus tropicalis (tropical clawed frog)] - Gene

Summary

Official Symbol: lpcat4provided by Xenbase
Official Full Name: lysophosphatidylcholine acyltransferase 4provided by Xenbase
Primary source: Xenbase:XB-GENE-5731127
See related: Ensembl:ENSXETG00000016994
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus tropicalis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as: aytl3; agpat7
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 1

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
104	current	UCB_Xtro_10.0 (GCF_000004195.4)	1	NC_030677.2 (142907635..142932597)
103	previous assembly	Xenopus_tropicalis_v9.1 (GCF_000004195.3)	1	NC_030677.1 (130477586..130503326)

Chromosome 1 - NC_030677.2 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables 1-acylglycerophosphocholine O-acyltransferase activity	IEA Inferred from Electronic Annotation more info
enables 1-acylglycerophosphoethanolamine O-acyltransferase activity	IEA Inferred from Electronic Annotation more info
enables 1-acylglycerophosphoserine O-acyltransferase activity	IEA Inferred from Electronic Annotation more info
enables 1-alkenylglycerophosphoethanolamine O-acyltransferase activity	IEA Inferred from Electronic Annotation more info
enables 1-alkylglycerophosphocholine O-acetyltransferase activity	IEA Inferred from Electronic Annotation more info
enables O-acyltransferase activity	IEA Inferred from Electronic Annotation more info
enables acyltransferase activity	IEA Inferred from Electronic Annotation more info
enables lysophosphatidic acid acyltransferase activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within lipid metabolic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within phospholipid biosynthetic process	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within phospholipid metabolic process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in endoplasmic reticulum	IBA Inferred from Biological aspect of Ancestor more info
located_in endoplasmic reticulum	IEA Inferred from Electronic Annotation more info
located_in endoplasmic reticulum membrane	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: lysophospholipid acyltransferase LPCAT4

Names: 1-AGP acyltransferase 7; 1-AGPAT 7; 1-acylglycerol-3-phosphate O-acyltransferase 7; 1-acylglycerophosphocholine O-acyltransferase; 1-acylglycerophosphoserine O-acyltransferase; 1-alkenylglycerophosphoethanolamine O-acyltransferase; 1-alkylglycerophosphocholine O-acetyltransferase; acyltransferase like 3; lysophosphatidylethanolamine acyltransferase 2; plasmalogen synthase

NP_001037863.1

EC 2.3.1.121

EC 2.3.1.23

EC 2.3.1.67

EC 2.3.1.n6

EC 2.3.1.n7

XP_012816973.1

EC 2.3.1.121

EC 2.3.1.23

EC 2.3.1.67

EC 2.3.1.n6

EC 2.3.1.n7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001044398.1 → NP_001037863.1 lysophospholipid acyltransferase LPCAT4

See identical proteins and their annotated locations for NP_001037863.1

Status: PROVISIONAL

Source sequence(s)

CR942439

UniProtKB/Swiss-Prot

Q28C60, Q5FWS1

Related

ENSXETP00000037017.4, ENSXETT00000037017.5

Conserved Domains (3) summary

cd07991
Location:99 → 305

LPLAT_LPCAT1-like; Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like

cd15898
Location:375 → 404

EFh_PI-PLC; EF-hand motif [structural motif]

cl28895
Location:375 → 475

EFh_PI-PLC; EF-hand motif found in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) isozymes

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

NC_030677.2 Reference UCB_Xtro_10.0 Primary Assembly

Range

142907635..142932597

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_012961519.3 → XP_012816973.1 lysophospholipid acyltransferase LPCAT4 isoform X1

UniProtKB/TrEMBL

A0A8J0SCG3

Conserved Domains (3) summary

cd07991
Location:63 → 218

LPLAT_LPCAT1-like; Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like

COG0204
Location:72 → 213

PlsC; 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid transport and metabolism]

pfam04760
Location:276 → 315

IF2_N; Translation initiation factor IF-2, N-terminal region