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LOC547802 xyloglucan endotransglucosylase/hydrolase 2 [ Glycine max (soybean) ]

Gene ID: 547802, updated on 7-Dec-2023

Summary

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Gene symbol
LOC547802
Gene description
xyloglucan endotransglucosylase/hydrolase 2
Locus tag
GLYMA_08G107300v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC547802 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 8 NC_038244.2 (8250685..8253224)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 8 NC_038244.1 (8250679..8253218)

Chromosome 8 - NC_038244.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102661687 Neighboring gene uncharacterized LOC100820280 Neighboring gene protein TIC 22-like, chloroplastic Neighboring gene uncharacterized LOC100775370 Neighboring gene phloretin 4'-O-glucosyltransferase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular cloning and characterization of a brassinosteroid-regulated gene from elongating soybean (Glycine max L.) epicotyls. Zurek DM, et al. Plant Physiol, 1994 Jan. PMID 8115544, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan endotransglucosylase/hydrolase 2
Names
brassinosteroid-regulated protein BRU1
NP_001238152.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001251223.2 → NP_001238152.1  xyloglucan endotransglucosylase/hydrolase 2 precursor

    See identical proteins and their annotated locations for NP_001238152.1

    Status: VALIDATED

    Source sequence(s)
    ACUP04002809, BT096944
    UniProtKB/Swiss-Prot
    C6TH31, P35694
    UniProtKB/TrEMBL
    A0A0R0IK22, C6TLM8
    Conserved Domains (1) summary
    cd02176
    Location:29 → 281
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038244.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    8250685..8253224
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P35694.1 GenPept UniProtKB/Swiss-Prot:P35694

Gene LinkOut

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Molecular Biology Databases