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XTH1 endo-xyloglucan transferase [ Glycine max (soybean) ]

Gene ID: 547775, updated on 7-Dec-2023

Summary

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Gene symbol
XTH1
Gene description
endo-xyloglucan transferase
Locus tag
GLYMA_16G045000v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
XTH; ext
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Genomic context

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See XTH1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
4
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 16 NC_038252.2 (4254497..4256591, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 16 NC_038252.1 (4272038..4274132, complement)

Chromosome 16 - NC_038252.2Genomic Context describing neighboring genes Neighboring gene WD repeat-containing protein LWD1 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic Neighboring gene xyloglucan endotransglucosylase/hydrolase protein B-like Neighboring gene uncharacterized LOC100781263

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular cloning and cDNA sequencing of endoxyloglucan transferase, a novel class of glycosyltransferase that mediates molecular grafting between matrix polysaccharides in plant cell walls. Okazawa K, et al. J Biol Chem, 1993 Dec 5. PMID 8244968

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables xyloglucan:xyloglucosyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in xyloglucan metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
xyloglucan endotransglucosylase/hydrolase 1
Names
probable xyloglucan endotransglucosylase/hydrolase
NP_001242655.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001255726.3 → NP_001242655.2  xyloglucan endotransglucosylase/hydrolase 1 precursor

    Status: VALIDATED

    Source sequence(s)
    ACUP04005635, D16455
    UniProtKB/Swiss-Prot
    C6TM30, Q39857
    Conserved Domains (1) summary
    cd02176
    Location:29 → 290
    GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038252.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    4254497..4256591 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q39857.2 GenPept UniProtKB/Swiss-Prot:Q39857

Gene LinkOut

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Molecular Biology Databases