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HD2A histone deacetylase HDT1 [ Glycine max (soybean) ]

Gene ID: 547649, updated on 10-Oct-2024

Summary

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Gene symbol
HD2A
Gene description
histone deacetylase HDT1
Locus tag
GLYMA_12G084700v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
HDT1; GmHDT3
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Genomic context

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See HD2A in Genome Data Viewer
Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 12 NC_038248.2 (6820035..6823286, complement)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 12 NC_038248.1 (6839463..6842714, complement)

Chromosome 12 - NC_038248.2Genomic Context describing neighboring genes Neighboring gene GABA transporter 1 Neighboring gene glucomannan 4-beta-mannosyltransferase 2 Neighboring gene uncharacterized protein At4g22758 Neighboring gene uncharacterized LOC121173187

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale sequencing of normalized full-length cDNA library of soybean seed at different developmental stages and analysis of the gene expression profiles based on ESTs. Sha AH, et al. Mol Biol Rep, 2012 Mar. PMID 21667246

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
histone deacetylase HDT1
Names
histone deacetylase 2a
nucleolar histone deacetylase HD2-P39

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001248955.2 → NP_001235884.2  histone deacetylase HDT1

    Status: VALIDATED

    Source sequence(s)
    AF532618, HO030013
    UniProtKB/TrEMBL
    I1LRC2
    Conserved Domains (2) summary
    cd20908
    Location:275 → 296
    SUF4-like; N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins
    pfam17800
    Location:7 → 101
    NPL; Nucleoplasmin-like domain

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038248.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    6820035..6823286 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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