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LOC547542 polygalacturonase PG1 [ Glycine max (soybean) ]

Gene ID: 547542, updated on 7-Dec-2023

Summary

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Gene symbol
LOC547542
Gene description
polygalacturonase PG1
Locus tag
GLYMA_19G006200v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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Genomic context

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See LOC547542 in Genome Data Viewer
Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 19 NC_038255.2 (595377..600019)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 19 NC_038255.1 (590769..595411)

Chromosome 19 - NC_038255.2Genomic Context describing neighboring genes Neighboring gene DEAD-box ATP-dependent RNA helicase 46 Neighboring gene DNA (cytosine-5)-methyltransferase DRM2 Neighboring gene mitogen-activated protein kinase kinase 3 Neighboring gene polygalacturonase At1g48100-like Neighboring gene ADP-ribosylation factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Polygalacturonase and polygalacturonase inhibitor protein: gene isolation and transcription in Glycine max-Heterodera glycines interactions. Mahalingam R, et al. Mol Plant Microbe Interact, 1999 Jun. PMID 10356800
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonase PG1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001251162.2 → NP_001238091.1  polygalacturonase PG1 precursor

    See identical proteins and their annotated locations for NP_001238091.1

    Status: VALIDATED

    Source sequence(s)
    ACUP04006594, AF128266, BT099383, FK025629, FK025739, FK025740
    UniProtKB/TrEMBL
    C6TNQ3, Q9SWS3
    Conserved Domains (1) summary
    cl19188
    Location:46 → 421
    PL-6; Polysaccharide Lyase Family 6

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038255.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    595377..600019
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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