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SF3'H1 flavonoid 3'-hydroxylase [ Glycine max (soybean) ]

Gene ID: 547475, updated on 7-Dec-2023

Summary

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Gene symbol
SF3'H1
Gene description
flavonoid 3'-hydroxylase
Locus tag
GLYMA_06G202300v4
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Also known as
F3'H
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Genomic context

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See SF3'H1 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
3
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 6 NC_038242.2 (18547179..18554082)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 6 NC_038242.1 (18731124..18738025)

Chromosome 6 - NC_038242.2Genomic Context describing neighboring genes Neighboring gene uncharacterized mitochondrial protein AtMg00810-like Neighboring gene chaperone protein ClpB1 Neighboring gene U4 spliceosomal RNA Neighboring gene U2 spliceosomal RNA

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The soybean F3'H protein is localized to the tonoplast in the seed coat hilum. Toda K, et al. Planta, 2012 Jul. PMID 22258749
  2. A putative autonomous 20.5 kb-CACTA transposon insertion in an F3'H allele identifies a new CACTA transposon subfamily in Glycine max. Zabala G, et al. BMC Plant Biol, 2008 Dec 2. PMID 19055742, Free PMC Article
  3. Down-regulation of flavonoid 3'-hydroxylase gene expression by virus-induced gene silencing in soybean reveals the presence of a threshold mRNA level associated with pigmentation in pubescence. Nagamatsu A, et al. J Plant Physiol, 2009 Jan 1. PMID 18423787
  4. Cloning of the pleiotropic T locus in soybean and two recessive alleles that differentially affect structure and expression of the encoded flavonoid 3' hydroxylase. Zabala G, et al. Genetics, 2003 Jan. PMID 12586717, Free PMC Article
  5. A single-base deletion in soybean flavonoid 3'-hydroxylase gene is associated with gray pubescence color. Toda K, et al. Plant Mol Biol, 2002 Sep. PMID 12175012

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. We conclude that F3'H, which is a cytochrome P450 monooxygenase and has been found to be localized to the ER in other plant systems, is localized in the tonoplast in soybean.
    Title: The soybean F3'H protein is localized to the tonoplast in the seed coat hilum.
  2. These results suggest that leaf tissues have a threshold mRNA level of the F3'H gene, which is associated with the occurrence of tawny pigmentation in pubescence.
    Title: Down-regulation of flavonoid 3'-hydroxylase gene expression by virus-induced gene silencing in soybean reveals the presence of a threshold mRNA level associated with pigmentation in pubescence.
  3. Virus-induced gene silencing resulted in a decrease in the content of quercetin relative to kaempferol in the upper leaves after viral infection.
    Title: Functional analysis of soybean genes involved in flavonoid biosynthesis by virus-induced gene silencing.
Submit: New GeneRIF Correction

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heme binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
flavonoid 3'-hydroxylase
Names
defective flavonoid 3'-hydroxylase
gray pubescence flavonoid 3'-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001250086.3 → NP_001237015.1  flavonoid 3'-hydroxylase

    See identical proteins and their annotated locations for NP_001237015.1

    Status: VALIDATED

    Source sequence(s)
    ACUP04002051, AF499730
    UniProtKB/TrEMBL
    C4NCJ5, Q8W3Y5
    Conserved Domains (1) summary
    cl12078
    Location:40 → 509
    p450; Cytochrome P450

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038242.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    18547179..18554082
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials