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LOC547454 Chitinase III-A [ Glycine max (soybean) ]

Gene ID: 547454, updated on 29-Jun-2024

Summary

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Gene symbol
LOC547454
Gene description
Chitinase III-A
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Glycine max
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
Annotation information
Annotation category: suggests misassembly
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Genomic context

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See LOC547454 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
104 current Glycine_max_v4.0 (GCF_000004515.6) 9 NC_038245.2 (32013103..32014781)
103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 9 NC_038245.1 (31094113..31095792)

Chromosome 9 - NC_038245.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121172738 Neighboring gene putative pentatricopeptide repeat-containing protein At3g49142 Neighboring gene uncharacterized LOC102665108 Neighboring gene plastidial pyruvate kinase 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular cloning and ethylene-inducible expression of Chib1 chitinase from soybean (Glycine max (L.) Merr.). Watanabe A, et al. Biosci Biotechnol Biochem, 1999 Feb. PMID 10192905
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Chitinase III-A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001249780.1 → NP_001236709.1  Chitinase III-A precursor

    See identical proteins and their annotated locations for NP_001236709.1

    Status: PROVISIONAL

    Source sequence(s)
    AB006748
    UniProtKB/TrEMBL
    A0A0R0IHC8, Q9S7G9
    Conserved Domains (1) summary
    cd02877
    Location:27 → 296
    GH18_hevamine_XipI_class_III; This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that ...

RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Glycine_max_v4.0 Primary Assembly

Genomic

  1. NC_038245.2 Reference Glycine_max_v4.0 Primary Assembly

    Range
    32013103..32014781
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases