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Vmn2r62 vomeronasal 2, receptor 62 [ Mus musculus (house mouse) ]

Gene ID: 546964, updated on 2-Nov-2024

Summary

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Official Symbol
Vmn2r62provided by MGI
Official Full Name
vomeronasal 2, receptor 62provided by MGI
Primary source
MGI:MGI:3757994
See related
Ensembl:ENSMUSG00000091926 AllianceGenome:MGI:3757994
Gene type
protein coding
RefSeq status
INFERRED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to enable G protein-coupled receptor activity. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Vmn2r62 in Genome Data Viewer
Location:
7 B3; 7 28.25 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (42413862..42442920, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (42764438..42793496, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 120-like Neighboring gene ribosomal protein L18A pseudogene Neighboring gene predicted gene 6004 Neighboring gene STARR-seq mESC enhancer starr_18750 Neighboring gene STARR-seq mESC enhancer starr_18751 Neighboring gene zinc finger protein 936 pseudogene Neighboring gene STARR-seq mESC enhancer starr_18752 Neighboring gene STARR-seq mESC enhancer starr_18753 Neighboring gene predicted gene 7211

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Young JM, et al. Trends Genet, 2007 May. PMID 17382427
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
vomeronasal 2, receptor 62
Names
vomeronasal receptor Vmn2r62

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001105059.1 → NP_001098529.1  vomeronasal 2, receptor 62 precursor

    Status: INFERRED

    Source sequence(s)
    AC150004
    Consensus CDS
    CCDS52219.1
    UniProtKB/TrEMBL
    G3UZC7, K7N712
    Related
    ENSMUSP00000130557.2, ENSMUST00000169130.3
    Conserved Domains (4) summary
    cd06365
    Location:36 → 506
    PBP1_Pheromone_receptor; Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily
    pfam00003
    Location:601 → 835
    7tm_3; 7 transmembrane sweet-taste receptor of 3 GCPR
    pfam01094
    Location:77 → 470
    ANF_receptor; Receptor family ligand binding region
    pfam07562
    Location:515 → 566
    NCD3G; Nine Cysteines Domain of family 3 GPCR

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    42413862..42442920 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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