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TVAGG3_1012440 glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein family [ Trichomonas vaginalis G3 ]

Gene ID: 5464143, updated on 17-May-2024

Summary

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Gene symbol
TVAGG3_1012440
Gene description
glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein family
Locus tag
TVAGG3_1012440
See related
TrichDB:TVAGG3_1012440; VEuPathDB:TVAGG3_1012440
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Trichomonas vaginalis G3 (strain: G3, nat-host: Homo sapiens, culture-collection: ATCC:PRA-98)
Lineage
Eukaryota; Metamonada; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas
Old locus tag
TVAG_2v1012440
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Genomic context

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See TVAGG3_1012440 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_067203.1 (19224678..19226801, complement)

Chromosome I - NC_067203.1Genomic Context describing neighboring genes Neighboring gene glycine-rich protein family Neighboring gene histone-lysine N-methyltransferase family Neighboring gene nucleoplasmin core domain domain-containing protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_067203.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Carlton JM, et al. Science, 2007 Jan 12. PMID 17218520, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein family
XP_001579557.1
  • Deepfry function prediction from predicted structure:protein binding protein;eggNOG seed ortholog:5722.XP_001579557.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_067203.1 Reference assembly

    Range
    19224678..19226801 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001579507.1 → XP_001579557.1  glycine-, glutamate-, thienylcyclohexylpiperidine-binding protein family [Trichomonas vaginalis G3]

    See identical proteins and their annotated locations for XP_001579557.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A2DLW8
    Conserved Domains (2) summary
    pfam00754
    Location:9 → 130
    F5_F8_type_C; F5/8 type C domain
    pfam10211
    Location:162 → 208
    Ax_dynein_light; Axonemal dynein light chain
Nucleotide Protein
Heading Accession and Version

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