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SPAR_L00860 Rpl15a [ Saccharomyces paradoxus ]

Gene ID: 54632176, updated on 17-May-2024

Summary

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Gene symbol
SPAR_L00860
Gene description
Rpl15a
Locus tag
SPAR_L00860
See related
FungiDB:SPAR_L00860; VEuPathDB:SPAR_L00860
Gene type
protein coding
RNA name
Rpl15a
RefSeq status
PROVISIONAL
Organism
Saccharomyces paradoxus (strain: CBS432, type-material: culture from neotype of Saccharomyces paradoxus)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
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Genomic context

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See SPAR_L00860 in Genome Data Viewer
Location:
chromosome: XII
Exon count:
1
Sequence:
Chromosome: XII; NC_047498.1 (198140..198754, complement)

Chromosome XII - NC_047498.1Genomic Context describing neighboring genes Neighboring gene Aat2 Neighboring gene Ade16 Neighboring gene hypothetical protein Neighboring gene Rad5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_047498.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Contrasting evolutionary genome dynamics between domesticated and wild yeasts. Yue JX, et al. Nat Genet, 2017 Jun. PMID 28416820, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Rpl15a
XP_033767807.1
  • Ribosomal 60S subunit protein L15A
    similar to YLR029C

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_047498.1 Reference assembly

    Range
    198140..198754 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_033911916.1 → XP_033767807.1  Rpl15a [Saccharomyces paradoxus]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A8B8UXC5
    Conserved Domains (1) summary
    PTZ00026
    Location:1 → 203
    PTZ00026; 60S ribosomal protein L15; Provisional
Nucleotide Protein
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