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Gm5916 predicted gene 5916 [ Mus musculus (house mouse) ]

Gene ID: 546123, updated on 17-Aug-2024

Summary

Official Symbol
Gm5916provided by MGI
Official Full Name
predicted gene 5916provided by MGI
Primary source
MGI:MGI:3643162
See related
Ensembl:ENSMUSG00000091411 AllianceGenome:MGI:3643162
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG546123
Expression
Restricted expression toward genital fat pad adult (RPKM 18.1) See more
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Genomic context

See Gm5916 in Genome Data Viewer
Location:
9 A4; 9 20.63 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (36030660..36040141, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (36119364..36128845, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene predicted gene 3428 Neighboring gene STARR-seq mESC enhancer starr_23775 Neighboring gene prostate and testis expressed 13 Neighboring gene STARR-seq mESC enhancer starr_23776 Neighboring gene STARR-seq mESC enhancer starr_23777 Neighboring gene STARR-seq mESC enhancer starr_23778 Neighboring gene STARR-seq mESC enhancer starr_23779 Neighboring gene predicted gene 3434 Neighboring gene predicted gene 3867

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
prostate and testis expressed family member

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001167587.1NP_001161059.1  prostate and testis expressed family member precursor

    See identical proteins and their annotated locations for NP_001161059.1

    Status: VALIDATED

    Source sequence(s)
    AC154630
    Consensus CDS
    CCDS52762.1
    UniProtKB/TrEMBL
    G5E8W5

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    36030660..36040141 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006510490.4XP_006510553.1  prostate and testis expressed family member isoform X1

    See identical proteins and their annotated locations for XP_006510553.1

    UniProtKB/TrEMBL
    G5E8W5
    Related
    ENSMUSP00000125855.2, ENSMUST00000168452.3