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Slc10a4-ps solute carrier family 10 (sodium/bile acid cotransporter family), pseudogene [ Mus musculus (house mouse) ]

Gene ID: 545758, updated on 2-Nov-2024

Summary

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Official Symbol
Slc10a4-psprovided by MGI
Official Full Name
solute carrier family 10 (sodium/bile acid cotransporter family), pseudogeneprovided by MGI
Primary source
MGI:MGI:3645333
See related
Ensembl:ENSMUSG00000060204 AllianceGenome:MGI:3645333
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm5868; EG545758; Slc10a4l
Summary
Predicted to enable bile acid:sodium symporter activity. Predicted to be involved in bile acid and bile salt transport. Orthologous to human SLC10A4 (solute carrier family 10 member 4). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in CNS E14 (RPKM 2.4), whole brain E14.5 (RPKM 2.4) and 13 other tissues See more
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Genomic context

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See Slc10a4-ps in Genome Data Viewer
Location:
5 C3.2; 5 38.44 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (72738981..72744893, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (72581638..72587550, complement)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 34144 Neighboring gene zygote arrest 1 Neighboring gene cyclic nucleotide gated channel alpha 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:73025974-73026235 Neighboring gene predicted gene 5297 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:73027370-73027613 Neighboring gene NIPA-like domain containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
  5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • solute carrier family 10 (sodium/bile acid cotransporter family), member 4 like

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables bile acid:sodium symporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in bile acid and bile salt transport IBA
Inferred from Biological aspect of Ancestor
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_163693.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122733
    Related
    ENSMUST00000031124.7

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    72738981..72744893 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001024147.2: Suppressed sequence

    Description
    NM_001024147.2: This RefSeq was removed because it is now thought that this gene is a pseudogene.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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