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Gm12888 predicted gene 12888 [ Mus musculus (house mouse) ]

Gene ID: 545677, updated on 8-Feb-2024

Summary

Official Symbol
Gm12888provided by MGI
Official Full Name
predicted gene 12888provided by MGI
Primary source
MGI:MGI:3652130
See related
Ensembl:ENSMUSG00000073764 AllianceGenome:MGI:3652130
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward stomach adult (RPKM 1.3) See more
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Genomic context

See Gm12888 in Genome Data Viewer
Location:
4 D2.2; 4 56.8 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (121173513..121182114, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (121316316..121324917, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene rearranged L-myc fusion sequence Neighboring gene STARR-positive B cell enhancer ABC_E8954 Neighboring gene STARR-seq mESC enhancer starr_11261 Neighboring gene predicted gene, 30102 Neighboring gene predicted gene, 40239 Neighboring gene STARR-seq mESC enhancer starr_11263 Neighboring gene STARR-seq mESC enhancer starr_11264 Neighboring gene palmitoyl-protein thioesterase 1 pseudogene Neighboring gene predicted gene 12886

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein LOC545677

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033791.3NP_001028963.1  uncharacterized protein LOC545677 precursor

    See identical proteins and their annotated locations for NP_001028963.1

    Status: VALIDATED

    Source sequence(s)
    AK136549
    Consensus CDS
    CCDS38867.1
    UniProtKB/TrEMBL
    B9EKG4, Q3UW77
    Related
    ENSMUSP00000095515.3, ENSMUST00000097905.3
    Conserved Domains (1) summary
    cl21494
    Location:52116
    Abhydrolase; alpha/beta hydrolases

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    121173513..121182114 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)