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Ankrd34a ankyrin repeat domain 34A [ Mus musculus (house mouse) ]

Gene ID: 545554, updated on 2-Nov-2024

Summary

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Official Symbol
Ankrd34aprovided by MGI
Official Full Name
ankyrin repeat domain 34Aprovided by MGI
Primary source
MGI:MGI:3617846
See related
Ensembl:ENSMUSG00000049097 AllianceGenome:MGI:3617846
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ankrd34
Summary
Is expressed in cerebral cortex subventricular zone; cerebral cortex ventricular layer; and cortical plate. Orthologous to human ANKRD34A (ankyrin repeat domain 34A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in cortex adult (RPKM 9.9), cerebellum adult (RPKM 9.5) and 9 other tissues See more
Orthologs
human all
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Genomic context

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See Ankrd34a in Genome Data Viewer
Location:
3 F2.1; 3 41.93 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (96503599..96507442)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (96595928..96600126)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:96361830-96361983 Neighboring gene predicted gene 15441 Neighboring gene STARR-seq mESC enhancer starr_08439 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:96368663-96368826 Neighboring gene thioredoxin interacting protein Neighboring gene STARR-seq mESC enhancer starr_08441 Neighboring gene STARR-positive B cell enhancer ABC_E6083 Neighboring gene polymerase (RNA) III (DNA directed) polypeptide G like Neighboring gene STARR-seq mESC enhancer starr_08442 Neighboring gene STARR-positive B cell enhancer ABC_E3451 Neighboring gene predicted gene, 52628 Neighboring gene RIKEN cDNA 6330549D23 gene Neighboring gene Lix1-like Neighboring gene STARR-positive B cell enhancer ABC_E7929 Neighboring gene RNA binding motif protein 8a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Cell-Type-Specific Gene Expression in Developing Mouse Neocortex: Intermediate Progenitors Implicated in Axon Development. Bedogni F, et al. Front Mol Neurosci, 2021. PMID 34321999, Free PMC Article
  2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  3. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, et al. Nature, 2002 Dec 5. PMID 12466851

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 34A
Names
ankyrin repeat domain 34

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024851.4 → NP_001020022.2  ankyrin repeat domain-containing protein 34A

    See identical proteins and their annotated locations for NP_001020022.2

    Status: VALIDATED

    Source sequence(s)
    AC122037
    Consensus CDS
    CCDS38556.1
    UniProtKB/TrEMBL
    B2RW11
    Related
    ENSMUSP00000102707.3, ENSMUST00000058943.8
    Conserved Domains (2) summary
    COG0666
    Location:9 → 133
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:8 → 35
    ANK; ANK repeat [structural motif]

  2. NM_001411495.1 → NP_001398424.1  ankyrin repeat domain-containing protein 34A

    Status: VALIDATED

    Source sequence(s)
    AC122037
    UniProtKB/TrEMBL
    B2RW11

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    96503599..96507442
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006501711.4 → XP_006501774.1  ankyrin repeat domain-containing protein 34A isoform X1

    See identical proteins and their annotated locations for XP_006501774.1

    UniProtKB/TrEMBL
    B2RW11
    Conserved Domains (2) summary
    COG0666
    Location:9 → 133
    ANKYR; Ankyrin repeat [Signal transduction mechanisms]
    sd00045
    Location:8 → 35
    ANK; ANK repeat [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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