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HCAG_06242 hypothetical protein [ Histoplasma mississippiense (nom. inval.) ]

Gene ID: 5444997, updated on 31-Oct-2024

Summary

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Gene symbol
HCAG_06242
Gene description
hypothetical protein
Locus tag
HCAG_06242
See related
FungiDB:HCAG_06242; VEuPathDB:HCAG_06242
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Histoplasma mississippiense (nom. inval.) (strain: NAm1)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Onygenales; Ajellomycetaceae; Histoplasma; unclassified Histoplasma
Orthologs
Aspergillus fumigatus all
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Genomic context

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See HCAG_06242 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
4

NW_001813976.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001813976.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mismatched DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mismatch repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MutSalpha complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001813976.1 Reference assembly

    Range
    2072659..2076507 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001538587.1 → XP_001538637.1  hypothetical protein HCAG_06242 [Histoplasma mississippiense (nom. inval.)]

    See identical proteins and their annotated locations for XP_001538637.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A6RBA4
    Conserved Domains (6) summary
    COG0249
    Location:330 → 1186
    MutS; DNA mismatch repair ATPase MutS [Replication, recombination and repair]
    pfam00488
    Location:939 → 1172
    MutS_V; MutS domain V
    pfam01624
    Location:336 → 458
    MutS_I; MutS domain I
    pfam05188
    Location:467 → 612
    MutS_II; MutS domain II
    pfam05190
    Location:798 → 887
    MutS_IV; MutS family domain IV
    pfam05192
    Location:637 → 754
    MutS_III; MutS domain III
Protein Accession Links
GenPept Link UniProtKB Link
EDN10439.1

Gene LinkOut

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Molecular Biology Databases
Research Materials